RNA id: AMCG00020487


Basic Information

Item Value
RNA id AMCG00020487
length 2202
RNA type mRNA
GC content 0.47
exon number 15
gene id AMCG00020487
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 22356174 ~ 22409493 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGACTGCACGGGCCGTAAGAGATTCCCGCTTCCAAGTGGACTCAGAtggaaatataaaactgaagaGGGCTGTGACCCTGCATGAGGGACACACAAGCTTTGCCATCCACACCTGGGACTCTAACGGCAAGAAACTGAGCACCAGAGTCACACTGGAAAATGAGTCGGGAAGCCACTCTCAGCACCTCACTCCTGGTGACACTGCTGGGCAGTTTATGAAAGTACTGGCAATTGATAAAGATGATCCAGAGACGTACAATGGTGAGGTCGTGTATAGCATCGTCAGCCAGGATCCTAAATTGCCCAACAACAACATGTTTATGATCAACTCTCAGACTGATGCGATTAGTGTGGCTTCACCTGGACTCGACAGAGAGTACACTGTATCTGTACCTGAAAATAAAGTGGGCTATGAAGTGGTGAAATTACCAGTGACCGATAATGATGAGCCTCATACACCAGCCTGGAATACCAAATACACAATCGTCAAAGGAAATGAAGGAGGCTTCTTCAATGTCAGCACTGGGCCTAACAAGATGGAGGGCATTATTGAAACAATTAAGCTCATGGCTCATGCTGTTGCAGTGGGTGGAGGAAAAGCTGAGGATCCAATGGAACTCATTATTACTGTATCTGATCAGAATGATAACAAACCTGAATTTATAAAGGACACCTTCTTGGGCAATGCTGCTGAAGGATCACAACCAGgttTTCAGTTTATGAAAGTAGTGGCAATTGATAAAGATGATCCAGAGACGTACAATGGTGAGGTCGTGTATAGCATTGTCAGCCAGGATCCTAAATTGCCCAATGACAACATGTTTATGATCAACTCTCAGACTGGTGCGATTAGTGTGGCTTCACCTGGACTCAACAGAGAGTACACTGTATCTGTACCTGAAAATAAAGTGGGCTATGAAGTGGTGACATTACCAGTGACTGATAATAATGAGCCTCACACACCAGCCTGGAATACCAAATACACAATCGTCAAAGGAAATGAAGGAGGCTTCTTCAATGTCAGCACTGGACCTAACAAGATGGAGGGCATTATTGAAACAATTAAGGTCTGGGCTTCTGGATCTTGTGAAGCGGCTCCACCATGCCAGCCTGGTTTCAATTTGGACCATTCTGTCTTCAGAGTAGACCGGAGGCATCTGCCACAAGGCTGGATAGTGGGCAAAGTGACTTTTGATGACTGCACGGGCCGTAAGAGATTCCTCTTCATCTCTGAGGATTCCCGTTTCCAAGTGGACTTAGAtggaaatataaaactgaagaGGGCTGTGACCCTGCATGAGGGACACACAAGCTTTGCCGTCCACGCCTGGGACTCTAACGGCAAGAAACTGAGCACCAGAGTCACACTGGAAAATGAGTCGGGAAGCCACTCTCAGCACCTCACTCCTGGTGACACTGCTGGGCAGctcatGGCTCATGCTGCTGCAGTAGTTGGAGGAAAAGCTGAAGATCCAATGGAAGtcattattactgtatttgatCAGAATGATAACAAACCTGAATTTATAAAGGACACCTTGTTGGGAAGTGTTTCTGAAGGATCACAACCAGGTATTCAATTTATGAAAGTAGTGGCAATTGATAAAGATGATCCACTGACATACAATGGTCAGGTCACATATAGCATCCTCAATCAGGATCCTAAATTGCCCAATGACAACATGTTTATGATCAACTCTCAGACTGGTGCGATTAGTGTGGCTTCACCTGGACTCGACAGAGAGAACTTGAAGGCTGCTGACAATGCCCCCACTGTTCCTCCCTCCTGGTGTTTGATTATGAAGGAGGCGGCTCAGAGGCCAGCTCTCAACTCTTCTAGTTCAGGAGGTGACCAGGACTATGACTGCCTTAACCAGTGGGGTCCACGGTTCAAGAAACTGACCGACATATACGGTGGTGGATCAGACCTAATCAGAtctttCACTGTGGAATGTGTCAGatgcCTAACAAgcAATTCTGATGCATACCTGCCTATGAAACTGATATTCTTAGATGTGTGCAGTGAAGCATCCTGCCCATACTTGGAGACTGGAGACGTTAGTCAGCGAGGGGCGGCGCCGGATGACACGTCACTGAGTGAAGTCACCTGCGAGCGGCCGGCCGAGGCGCACTTTCGGTGGGACTACCTGTGGGCACGGAGCGCTGCACACCTGGGAACAAGCCGAGGGATTGATTTATAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU79565 lncRNA upstream 1195 22354018 ~ 22354979 (+) True G63589
TU79529 lncRNA upstream 148143 22207708 ~ 22208031 (+) True G63562
TU79426 lncRNA upstream 716518 21638996 ~ 21639656 (+) True G63477
TU79397 lncRNA upstream 1271636 21084117 ~ 21084538 (+) True G63448
TU79378 lncRNA upstream 1775741 20563817 ~ 20580433 (+) True G63433
TU79791 lncRNA downstream 564385 22973878 ~ 22974091 (+) True G63772
TU79803 lncRNA downstream 644305 23053798 ~ 23058400 (+) False AMCG00020505
TU79804 lncRNA downstream 658818 23068311 ~ 23070149 (+) True G63784
TU79809 lncRNA downstream 667408 23076901 ~ 23077313 (+) True G63787
TU79811 lncRNA downstream 676885 23086378 ~ 23086933 (+) True G63789
AMCG00020480 mRNA upstream 5768 22346354 ~ 22350406 (+) True AMCG00020480
AMCG00020481 mRNA upstream 9845 22334724 ~ 22346329 (+) True AMCG00020481
AMCG00020479 mRNA upstream 103923 22250662 ~ 22252251 (+) True AMCG00020479
AMCG00020474 mRNA upstream 114726 22225901 ~ 22241448 (+) True AMCG00020474
AMCG00020473 mRNA upstream 158882 22190587 ~ 22197292 (+) True AMCG00020473
AMCG00020484 mRNA downstream 689 22410182 ~ 22425882 (+) True AMCG00020484
AMCG00020486 mRNA downstream 21043 22430536 ~ 22431810 (+) True AMCG00020486
AMCG00020485 mRNA downstream 58030 22467523 ~ 22473932 (+) True AMCG00020485
AMCG00020490 mRNA downstream 134307 22543800 ~ 22554214 (+) True AMCG00020490
AMCG00020491 mRNA downstream 170604 22580097 ~ 22582459 (+) True AMCG00020491
TU79495 other upstream 214017 22135368 ~ 22142157 (+) True AMCG00020470
TU79182 other upstream 2719953 19631325 ~ 19636221 (+) True AMCG00020438
TU79166 other upstream 2755437 19597238 ~ 19600737 (+) False AMCG00020439
TU78921 other upstream 4022142 18332569 ~ 18334032 (+) True G63045
TU78779 other upstream 4284131 18067787 ~ 18072043 (+) True AMCG00020407
TU79808 other downstream 660918 23070411 ~ 23074945 (+) True G63786
TU79994 other downstream 1642496 24051989 ~ 24053877 (+) False G63939
TU79996 other downstream 1642496 24051989 ~ 24055592 (+) True G63939
TU80130 other downstream 2069342 24478835 ~ 24482114 (+) True G64046
TU80333 other downstream 2664564 25074057 ~ 25076690 (+) True AMCG00020572

Expression Profile