RNA id: AMCG00020488


Basic Information

Item Value
RNA id AMCG00020488
length 510
RNA type mRNA
GC content 0.48
exon number 5
gene id AMCG00020488
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 22352946 ~ 22354526 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGTCTGTAGAGACGCGATTAGAAAATGCAAACCCTCTTATCTATCAGCGGTCAGGGGAAAGATTACTAACGGCGGAGGATGAAGACGAAGACTTTGCGGATCCTATCGACGACAGAGAAATTTTCGATATCCTTgttgttttttcccctaatTTCTTACATCTGATCAGATCCATTAATGACCCCGAGCACCCGCTGTCCCTGGAGGAGTTAAATGTCGTGGAACAAGTGAGGGTCCATGTGAACGACAAGGAGAGCGCCGTCTCTGTGGAGTTCACCCCCACCATCCCTCACTGCAGTATGGCCACCTTAATCGGCCTGTCCATCAAAGTCAAGCTGCTTAGATCACTACCGGACAGGTTCAAGATTGACGTGCACATAACACCTGGTACACATGCCTCTGAACAGGCAGTTAACAAACAGCTCGCAGACAAAGAAAGAGTCGCCGCAGCTTTGGAGAACTCGCACCTACTGGAAGTGGTGAACCAGTGTTTGTCTTCAAGAATTTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU79510 lncRNA downstream 220209 22131002 ~ 22132737 (-) False AMCG00020471
TU79512 lncRNA downstream 220987 22131002 ~ 22131959 (-) False AMCG00020471
TU79396 lncRNA downstream 1269485 21083262 ~ 21083461 (-) True G63447
TU79287 lncRNA downstream 2053103 20288703 ~ 20299843 (-) False AMCG00020446
TU79277 lncRNA downstream 2096547 20255922 ~ 20256399 (-) True G63346
TU79614 lncRNA upstream 27838 22382364 ~ 22384918 (-) True G63628
TU79616 lncRNA upstream 28991 22383517 ~ 22391215 (-) True G63629
TU79624 lncRNA upstream 60809 22415335 ~ 22419743 (-) True G63634
TU79666 lncRNA upstream 86266 22440792 ~ 22446550 (-) True AMCG00020489
TU79677 lncRNA upstream 191242 22545768 ~ 22546057 (-) True G63680
AMCG00020482 mRNA downstream 27981 22321085 ~ 22324965 (-) True AMCG00020482
AMCG00020483 mRNA downstream 45471 22270714 ~ 22307475 (-) True AMCG00020483
AMCG00020477 mRNA downstream 129247 22216569 ~ 22223699 (-) True AMCG00020477
AMCG00020475 mRNA downstream 138005 22196435 ~ 22214941 (-) True AMCG00020475
AMCG00020476 mRNA downstream 168349 22165779 ~ 22184597 (-) True AMCG00020476
AMCG00020489 mRNA upstream 89779 22444305 ~ 22466767 (-) False AMCG00020489
AMCG00020492 mRNA upstream 119767 22474293 ~ 22512944 (-) True AMCG00020492
AMCG00020493 mRNA upstream 198322 22552848 ~ 22579832 (-) True AMCG00020493
AMCG00020494 mRNA upstream 229132 22583658 ~ 22588193 (-) True AMCG00020494
AMCG00020495 mRNA upstream 247414 22601940 ~ 22616819 (-) True AMCG00020495
TU79413 other downstream 1040341 21312202 ~ 21312605 (-) True G63464
TU78822 other downstream 4312986 18037042 ~ 18039960 (-) False G62961
TU78814 other downstream 4337086 18006168 ~ 18015860 (-) True G62961
TU78823 other downstream 4355929 17994544 ~ 17997017 (-) False AMCG00020403
TU78680 other downstream 4726757 17610664 ~ 17626189 (-) True G62853
TU79676 other upstream 189316 22543842 ~ 22544689 (-) True G63679
TU79847 other upstream 800166 23154692 ~ 23161900 (-) True G63819
TU80215 other upstream 2322221 24676747 ~ 24677810 (-) False AMCG00020561
TU80345 other upstream 2756584 25111110 ~ 25112551 (-) True AMCG00020581
TU80367 other upstream 2766572 25121098 ~ 25139385 (-) False G64247

Expression Profile