RNA id: TU79666


Basic Information

Item Value
RNA id TU79666
length 5467
lncRNA type sense_over
GC content 0.37
exon number 2
gene id AMCG00020489
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 22440792 ~ 22466767 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GGTGGACCCACAAGTGTCCTAGTAAAGTAAAAGAAGGCAAGACAAATTGTACTTAATTCATTCTTCTAAGACAAGgaTTACAGTATTGATGAGGAGGCAGCGTTGCAGGCAGCCCTGGCACTCTCCCTGTCTGAGAACTGAACACACTGATCCCTCCGCCCTGATCCCCTCCGAGTCCATCATCCTTTGCACTGGGCACCTCCCTCCCCCGTTTACTGCTGCCAAGCACCTCTTTGCATTCCACACCATGCACCTTGGCCAGACAGCCATCTGTCCCCTCCATCCCTGAAGCTTCATGAATCAAGttagaattattattagttcTGTTATTTCCTTCTCTCTAAGAAGTGGAGGCAGCCATTGACAAAGGCTGGGTTATATAGCAATGCAAAGATGGACTGAAACATTTATATGGAAATAGAGATAACCAGTACATTAACTGAAGTACCCCGGTCTTGCACTCCTGCAGGtagttttgtttgtcattttattttgtgattgatGAGATTCTGCCGAGCCAACGTCCACTGGGTGATGAGCCACAGGTAGGGTCTGGGTGTTGACTCCGACAAGGCCGAGATGGCTCTTTTACTGTAGTTTATTTAACAGTACATGAATATTGATTGCAGATGGCATGCATAAAAGTCATGGCTACAACAGAGCACAGACAGAAGCTTAAGTAATCCAAAGCACTTCACATAATTAATGCATGTAAAGTAAGACcgcttttcttaaaaaaaaaaaaaaaaaaagtatccaGTGTGAATTCACAACATAGAGTAGGTTCACTTACTATAATCAATACAGATGGATGTTTAATTTTCGTTCTATTAAATAGAAATTAGTTGAGAAAATATCTTTGGGccaaaaagtgaaaataaggATATTTACAtaccaaatattttaatttacataccGCTGTAATAGGTGCATTCACCAtgtcattaataaaatgtaggTAGTAATTTGGTTTCACgtacagaaattgaattctgaAAAATCAGACTTTCAGATGAGAGTTGGGGGTGAGTGAGTGTTTGGATGTGGGCGATGACTCCGCAGAATGTGGTGTTTTCTCAGATTGCTTTGATTTTTCTCTAATTGGACCAAACTGCAGTTTACGAAATCCATGAATTGGGCATAGCATGCTTTAAAAGTGGTGATCAAACTCCAGCCTTCATCTGTACCTTCCTGCTGTTAGGATTCAATACTGAGCACAGAGAGGGAAGCCAAATATTGGAATTTGTTgtgaataacaaacaaaatcttaGGAAAATCAATATCCCTAGATATATATACGCTTCTCACTTTCcctgttgttctttttcttttttcccttttttataaGGGTTCTTGTGAATAATTGCACTTAACTGCATTTTCTACATGAGCAAAGTGTAgtacttttcttgttttataacTAACAAAATGAATAGCAAAGCATTTATTCTTCATACTGCTGTTACCTGTTTAACTTGCTACAATACTATTTTTTACAAAGCATCAGATAAactatatttttgaaaacatttcagtttcaaatgGTGCACTAATAACAAGTCATACGCCTTTAACAAATAGGGGGCGTTGATCATTTCACATTCTTTTTACATAACCTTGGGTAATGTATTGCTCAATCAAGCAGTTTTCCACCTGGTGGGATGGCTAAGAGACCTTTGTGAAcctaaaaaaaatacttaatatgtAAGCAAGGTGGTGTGTAATGACAGGGCTCGGGCACTAGAGGGCCACCTTAGTGAAAAAACATCCTTTTTTTACTGAGGATTctcaaatgtactgtatttctgAAATAGTTACATGCACCAGGGTCTGTCCTAAATCCATTTATTTAAGTTtgcaaattttaaaaatacacacacatacttattGTTATAAAGCCCTGGGActtttctatttgtgttttgctaaggtctctctttttttttttttttttttaagacttttaTTAAGTAAGGTGCATCACTACTATTGGGATCCTTGCTGgggaatttattttcttgtgattTGAACCACACGTCTGTAAGACCTGAGGAAGTGTCGTGATGGCCTTCGCAATCCTAGAGGGTTCAATCAAGGAAAGTTGTCTGGAGTGAGTTCACCTAAATTGGGCAGCAGTTGTCTTTACTGAGCAGGCCCTCAGTGACCAGGTGGCTCGCCCAAGCTAATCTCTGTCTTCCTGGGGTCAATAGCTCTGAAACGTGTCAGTTGGGTTATCTGGGTCAAATGATGATGTGGATGGTGGCTTAGCTTGGAGAGCTCTTGGCTGCCCTCATTCCTCTTTCCACATGGCTGTGGGCTGTGTGTGCTTCAGTTTGAAATAGTGAGTCTGGTGCTCCACACCTaagcaaacataaatacacagatacaaTGTTTATTTCTGAACTTCATTAGCGATCCAGTGCCTATGGAATCCTGTCCCAACAGTTCAAACACGTCAGCTGCCAAGCAACCAGCAATAACCTCGCCGTCTTTCATTACCTCTTCATGTAATACGTGTAAAGCAGCCGTGACTATGACAGCCAGTTCAGATCAATAAAGTTCTGTTGTCCttgataaaatatgtaatatatcgCTTCCTTAATTAGGCAAAACAAACGGAGAAGGTGAAAAATTAGTTCATAACTTTCCTATTTGCAGTTACACTGTATATCAGGAAATACCAGGAGGCTGGTTTTTATTAgtcatttttgatttattttatttcaatactgAATTGAAATATGTGTGACTTCTGAATTTGTGCAGAGCATGCTGTTCAACTATTTGTCAGTTGTTCAGTGAGAGCATTTACTTGAATGCAAATGCTGTTGAAACATGTATTAATAGCTTGCAATTAATGTCAGTTCTGGGGTTTGCTGAGATTTATTTGCTGATCAACCATACGTGTAGAAGAGTGGTTTGTTCTGCTTGAActgtaagaatatatttattttaaagaagcagTAAGTCACCGAGAGGACTTACAAACCATGTGAATATATGGCTTTGAGTTACTTCAAGAATAACCTTGTCAAgtaaacaagcaaatattttaatatatttgcatcTGAAAGAGGGAAGTTTGAAATTGTATTAGTACTTTGTGCACGAGTTTGTCCGTGCTAGTAACAGAAAGGGAAGAAATATGTCTACTgattaatatttgtgtttaaagtCTTCCTCTTAACTTTTATTACAAtagctaaaataaaatggttttatgTTTAGACAGGATTCCATTGGATGGAACAGTGTTGGCTTCTTACCAAACAGTCTGTTCATCAACTTCCTAGTTAATATGGCCAAACATATGCAGACAATTGCCCCTCTGTCAAGCTTGCAGCTTTCATGGCCACTGTGATTCATTACCTGCTCAAAAAACACCTTTAAAGGGGCATTGTTTTACTCCATACAGAATTGAGCAGACATATGAATCATTAGGTACATTTTATAGCTAGGATAAACTGAGggctttaaatgtgtttctcatttaaaattgtaaactgGCAAGGTTAATAAGAATCTGAACTATCCTCACACTTTTATCCTAAGAAATGAATTTATTATCAGTACACCAGCATTTCTGTGTTTGCTATCACTGAAAGGCAGTAAGTGTTAAAGATTACAAAATTCGgataaatgttcaaatgttaagcaaattaaatctagaatacaaagaaaagaaggaaactGGAGAGACATGAATGTCAAAAGGCTTTTTGACACGTTTTTTCATTACTAAATTTAGGAATCGCATACCTATGATAATGGTCTCTACTAACCAGAATCAAAGATTTgcttcaacatttttttttttcctttctcaatTTTTTGGGCTAATGGAGTATTatgtgaaagtatttttttaaatatcatattGTGGGGCTTGGTAATATTCTCAAATAGATTCTGAACTGCTTATTACCAGGGTAGATATCATTGTATCAGAGATCACTAACATGAggtcatttgtaaatgtattattattctgcttCATCAGATAAACAGATGGAAGACTTGGAAACCAAAATGTAACTCAATTTACAATTTCAGCAAAGTGATTCTTTAGGTCGGGCTATGTTGTTTTGAACAAAAGAATTGTACTTGTTGGCTTTTTATTGCTGTGCTGTGAAAGTAAGTTTTAGGGGGATAAAAGCAAATAGTTAAAGTGAGacattttctgtactttgaTGTACAATATCTTTGACTtataaaacaagtaaacatTCAGAAATACATACGAAATCAATCGTGtattaacaatttatttatatataattatttttgtagttttttttttttcattgttatagCAGCTaatttctgtctgttttattaaGGTAGTGGTAGAAAATTGAATGGGGGGGGCAGTTTATAACCAGTAAGAGTGAGCATCTTTCCCCAGTCTCACACTTTGTAAACCTGCTGTATGCCCCTCTGATTAGATTCTTCAAATGTCATGATCACCTTTGAGTgtaggtgtgtatatatacatatatatttctttgtatgtatatatacatatataagtatgtatgtttgtatgtatatactatatatgtgtgtgtactgtatatacatttgttttcagtaacGTGTGCACaactctttattatttatttttgacttaCTGAATTATCAGTAATTTTTTGTatcctgcatttgtttttgtttggtttcttttgcTCTGTCACTCACATTGTATCCTAGCCATTACAGCAGCTGAATGTCCACAAGGGGGCACAGCATTTCTGTGTTGAGCTGTAGGCTGTGCTAGTCTCCTGACCTCACTGGAAACGGAGACCACTGACACTGTAGTGAAGCCCCATTTCGCATGACAATTTTATAAAGATATCGATACAGTGGCTCTGAGCTTATGCATTGAACAGGATTTATTGAAAGAATCAGAAAGCATATGGCCAGGTCAAGAGTCACCTTCACTGCCCACACATTACTTTTATGTCCACTGAAGATATTCCCAGGGCTATACTATACTCGCTTTGACTAAAGTGATGTcaatgtaaactgtaaaagCATAGCCCAGTGTTGTATTTAAGAAGCTGCCTGCAACTGTTGCGCTCTCGTTCACTGACCTGTCTTCATTACCATGCCTTTCCATccccttgtatttatttatttattttgtaacttgCATACTGCACCTTATAATGAATTCAGATCTTGCCTGTTGCGAAAGCCCTTACAGAAGCTGCATTTTAACACAACACTGTGCTTCACAGCAATGTAAAAATAGTTTGGGAGAATAAGGGCCACATGCAGCAATCAGTCAGGTTAACCAGCAGAGTCGAGTGTGACCTCTCTAGGCCAAGAAAACGGCACTGGCTGCAGTTCCAAATGTAGGGACTGTGCATTATCTGTGATTTATgcatacaataatattataaaaaatgaaacattttgaagTTGTTACACTGTTTGAGGTTTAATAAAAATAcctttattctgt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU79624 lncRNA downstream 21049 22415335 ~ 22419743 (-) True G63634
TU79616 lncRNA downstream 49577 22383517 ~ 22391215 (-) True G63629
TU79614 lncRNA downstream 55874 22382364 ~ 22384918 (-) True G63628
TU79510 lncRNA downstream 308055 22131002 ~ 22132737 (-) False AMCG00020471
TU79512 lncRNA downstream 308833 22131002 ~ 22131959 (-) False AMCG00020471
TU79677 lncRNA upstream 99218 22545768 ~ 22546057 (-) True G63680
TU79678 lncRNA upstream 102865 22549415 ~ 22549727 (-) True G63681
TU79679 lncRNA upstream 103397 22549947 ~ 22550167 (-) True G63682
TU79680 lncRNA upstream 104970 22551520 ~ 22551798 (-) True G63683
TU79681 lncRNA upstream 105450 22552000 ~ 22552303 (-) True G63684
AMCG00020488 mRNA downstream 86266 22352946 ~ 22354526 (-) True AMCG00020488
AMCG00020482 mRNA downstream 115827 22321085 ~ 22324965 (-) True AMCG00020482
AMCG00020483 mRNA downstream 133317 22270714 ~ 22307475 (-) True AMCG00020483
AMCG00020477 mRNA downstream 217093 22216569 ~ 22223699 (-) True AMCG00020477
AMCG00020475 mRNA downstream 225851 22196435 ~ 22214941 (-) True AMCG00020475
AMCG00020492 mRNA upstream 27743 22474293 ~ 22512944 (-) True AMCG00020492
AMCG00020493 mRNA upstream 106298 22552848 ~ 22579832 (-) True AMCG00020493
AMCG00020494 mRNA upstream 137108 22583658 ~ 22588193 (-) True AMCG00020494
AMCG00020495 mRNA upstream 155390 22601940 ~ 22616819 (-) True AMCG00020495
AMCG00020498 mRNA upstream 331187 22777737 ~ 22789084 (-) True AMCG00020498
TU79413 other downstream 1128187 21312202 ~ 21312605 (-) True G63464
TU78822 other downstream 4400832 18037042 ~ 18039960 (-) False G62961
TU78814 other downstream 4424932 18006168 ~ 18015860 (-) True G62961
TU78823 other downstream 4443775 17994544 ~ 17997017 (-) False AMCG00020403
TU78680 other downstream 4814603 17610664 ~ 17626189 (-) True G62853
TU79676 other upstream 97292 22543842 ~ 22544689 (-) True G63679
TU79847 other upstream 708142 23154692 ~ 23161900 (-) True G63819
TU80215 other upstream 2230197 24676747 ~ 24677810 (-) False AMCG00020561
TU80345 other upstream 2664560 25111110 ~ 25112551 (-) True AMCG00020581
TU80367 other upstream 2674548 25121098 ~ 25139385 (-) False G64247

Expression Profile