RNA id: AMCG00020494


Basic Information

Item Value
RNA id AMCG00020494
length 759
RNA type mRNA
GC content 0.52
exon number 6
gene id AMCG00020494
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 22583658 ~ 22588193 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGCGGAGGAGAAACACGACACTGACGAAGGTCTGGGTCTTCTGGACGGGGAGTATCCGGGGGACCACAGCGTGGAGGACCCTGAGTTGGAGGCTATCAAAGCCAGGGTTCTTGAAATGGAACAGGAAGCTGAGAAACTAAAGGAGGTGCAGTATGAGGCTGAGAAACAGCTCATCATGAGCCCACAGACAAGTTTCTTCTACCCAATGACGCATGAAGAAAAGATTGATGCAGATAATCGATCCGTCTACGTGGGAAATgtgGACTATGGTGCAACAGCAGATGAGCTGGAAATTCATTTCAATGGCTGTGGTCCAGTTAATCGAGTGACCATCCTTTGTGACAAATTCACTGGTCATCCCAAAGGgtTTGCATACATTGAGTTTTCAGACAGGGATTCGGTGAAGACGGCTATGGCTCTTGATGAAACTTTATTCCGGGGGAGAATCATAAAGGTGCTCCCAAAAAGGACAAACATGCCAGGGATCAGCAGCACCGACCGTGGCAGTCACCGTGGCAGCCGCCCTCGGGGACGAGGCTTCCGCTCCTCCAGGTACAACAGTGGTTTTCAGGCCAGGTACCGTGGCCGCTCGTCCAGGTCAGTACTGCAGCCCCCCACACTCTCTCCAGCAGGGGGCTGCCATGCAGGAAAGAGGTCCTGGGGCAATCTGGAAAGCTGTGACCAAGCTGCAAAAAGGCACTCATGTCTTCTACTGATAAATCCACTCACCGATGACTCCCATTCACTTTCAAGCAAA

Function

GO:

id name namespace
GO:0097159 organic cyclic compound binding molecular_function
GO:1901363 heterocyclic compound binding molecular_function

KEGG:

id description
K14396 PABPN1, PABP2; polyadenylate-binding protein 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU79682 lncRNA downstream 31075 22552382 ~ 22552583 (-) True G63685
TU79681 lncRNA downstream 31355 22552000 ~ 22552303 (-) True G63684
TU79680 lncRNA downstream 31860 22551520 ~ 22551798 (-) True G63683
TU79679 lncRNA downstream 33491 22549947 ~ 22550167 (-) True G63682
TU79678 lncRNA downstream 33931 22549415 ~ 22549727 (-) True G63681
TU79826 lncRNA upstream 473865 23062058 ~ 23068200 (-) True G63799
TU79818 lncRNA upstream 480126 23068319 ~ 23070302 (-) True G63791
TU79827 lncRNA upstream 482208 23070401 ~ 23070820 (-) True G63800
TU79863 lncRNA upstream 583615 23171808 ~ 23182107 (-) True G63829
TU79873 lncRNA upstream 605951 23194144 ~ 23194529 (-) True G63834
AMCG00020493 mRNA downstream 3826 22552848 ~ 22579832 (-) True AMCG00020493
AMCG00020492 mRNA downstream 70714 22474293 ~ 22512944 (-) True AMCG00020492
AMCG00020489 mRNA downstream 116891 22444305 ~ 22466767 (-) False AMCG00020489
AMCG00020488 mRNA downstream 229132 22352946 ~ 22354526 (-) True AMCG00020488
AMCG00020482 mRNA downstream 258693 22321085 ~ 22324965 (-) True AMCG00020482
AMCG00020495 mRNA upstream 13747 22601940 ~ 22616819 (-) True AMCG00020495
AMCG00020498 mRNA upstream 189544 22777737 ~ 22789084 (-) True AMCG00020498
AMCG00020502 mRNA upstream 202260 22790453 ~ 22824939 (-) True AMCG00020502
AMCG00020504 mRNA upstream 329179 22917372 ~ 22930992 (-) True AMCG00020504
AMCG00020503 mRNA upstream 350604 22938797 ~ 22944614 (-) True AMCG00020503
TU79676 other downstream 38969 22543842 ~ 22544689 (-) True G63679
TU79413 other downstream 1271053 21312202 ~ 21312605 (-) True G63464
TU78822 other downstream 4543698 18037042 ~ 18039960 (-) False G62961
TU78814 other downstream 4567798 18006168 ~ 18015860 (-) True G62961
TU78823 other downstream 4586641 17994544 ~ 17997017 (-) False AMCG00020403
TU79847 other upstream 566499 23154692 ~ 23161900 (-) True G63819
TU80215 other upstream 2088554 24676747 ~ 24677810 (-) False AMCG00020561
TU80345 other upstream 2522917 25111110 ~ 25112551 (-) True AMCG00020581
TU80367 other upstream 2532905 25121098 ~ 25139385 (-) False G64247
TU80385 other upstream 2620866 25209059 ~ 25211063 (-) True G64260

Expression Profile