RNA id: AMCG00020503


Basic Information

Item Value
RNA id AMCG00020503
length 2160
RNA type mRNA
GC content 0.49
exon number 12
gene id AMCG00020503
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 22938797 ~ 22944614 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGAGCAGCTTCAGTGTCAATCCCTTTTCTTCTGAGTCTCAAGAGAACATCACAGGTGCTGTGAGCAGTCTGTCTCTGAGGAGCCAACATACCGAGATTCAGGTGGATAATCTTTCGGAAAACATTCAGATTTTTATGCCACGGAAATGTGACAAAGTCTCTTACAAGAATATATCCACAGCATCAGGGAATGCTGTGACTACATCCTTCAACAACACCATATCCAATAACACTGTGATTCTAATAGTGGAGCCAAACAAGAATATTACCCTCAAGCTGTTACTGGCATATCAATACTTGCCCAATGAAACCTTCAGTCATTACAATACTACCCTGAAATGGAAACTCACAGagGGTAGCTCTGTCCAGGTGGGCTATCGCTGGCTGCTGTCACCTCAAATGTTGAGCTTAGGTTATGGGACCTGGTATGTACATATCACACCATTAAACCTTACAAAAAAGGACAATGTGAATATCAGCATTTTCTCCTTCAGCACCAAATGTACTTACTGGGATAAAACCAATAATAGATGGGGCTCCGAGGGCTGCCAGGTTGGCCTACAGTCTCAGCCCTGGCAGACACAATGCCTGTGTAATCACCTGACATTTTTCGGGAGCTCCTTTTTTGTGATGCCAAACCAGGTGGATCTGAGTCAAACAGCAGCGTTATTTGCCACGGTCTCAAAGAACCCAGTGGTGGTGGCATTGCTTTCCGTGTTCTTTGGCCTTTACTTGATCACACTGGTGTGGGCCTGGAACGCAGACAAGAAGGCACAGAAAAAGAGGAAGCTTACTCTGCTGGATGATAATCACCACTGTGCTCAGTATTACTACTTGTTCAATGTCCAGACTGGGCACCGCAGTGGGGCGGGCACCTCTGCCAAGGTCCATGTGACTGTGCGAGGCTCAGATGGGGAGAGTGATCCCCATCACCTAAATGACCCTGAAAAGCCAGTGTTTGGGAGAGGAGGGGTAGACATGTTCCTCCTCAGCACCCCCTTCTCCCTGGGGGAGCTGCAGAGCATCCACCTGTGGCACGACAACTCAGGAGGAAATCCCGCTTGGTATCTCGACAAAGTGTTGATTCAGGACCTGCAGACGCGGAGATGCTGGCACTTCCTATGTTCCACCTGGCTGTGCTCCACGAGAGGGGATAGAATGACAGATAGGACCTTCCACCCTGCAAAGAAGAACGAGATCACCAGCTTCAGCAACATCTTCCAAAGCAAAACATCTAGTGGCTTCAGAGATGAGCACATTTGGATCTCCATCCTTGACCCACCCCAGCGCAGTCCCTTCACACGTGTCCAGAGAGTGTCTTGCTGCATGTGCCTTCTGCTCTGCACCATGGCCATCAACATTATATTCTGGAACCTCCCCACAGACAGCCAGTCCCCAGTTATCATCAAAGTTGGCTCTTTCCATGTCACCTGGCAGGAGATAATGATTGGGATTGAGAGTGGCCTACTCATGTTTCCCATCAACATCCTTATCATCACAATCTTCCGCAGCATCAAACCTCGCCAAGCCCAGTCCAAAGAAAAGGAGCAGGACAGTGGAATCTCAGAAACCAAAATGGCCCCAGTTCCCACCTTGAAATCCCTCCTTAAGGATACTGAGGATCTGGTTACTTGCCTCAGTAAACATGCAACAAACAAGGTGCCAGCTCTGGACAAAAAGCTAGAGCTTCCATCTGACCTCATCCCTGCCTTGGAACTCGTGAATGGAGTGATTATGCAAATGCAAGATGAGAATAACACTGATCCTCACTGGATCTACTGCAGCCAGTTTGTGTTCTGCAGTCTGAGCCACCTTTCCGAGTCCCTGGGAAGTGTTGGGGAGAATGCTTTCCCCAGCAGTGCTGACTACAAGCAGGTCCAGCACACCATTGCACAGATGCTGAAGCAGGTGGAGGTTATTTGCTCCAAGCAGAAGCCTCAGAGCCCCCCGCCTGTtgccaagaagaagaagagcaaAAGCTGTTGGCTGCCCTGGTGGTTTGTCTTTGTAGGCTGGGCCCTCTTATTGTCCATCAGCGGCATCTCCACCTTCTTCACCCTCCTTTACGGCTTCTTCTATGGCAAAGACTCCTCCCTCAAGTGGATTATGTCTTTGGGGCTGTCCCTCTTCCAGAGCATCTTTGTTTTGCAACCACTTAAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU79682 lncRNA downstream 386214 22552382 ~ 22552583 (-) True G63685
TU79681 lncRNA downstream 386494 22552000 ~ 22552303 (-) True G63684
TU79680 lncRNA downstream 386999 22551520 ~ 22551798 (-) True G63683
TU79679 lncRNA downstream 388630 22549947 ~ 22550167 (-) True G63682
TU79678 lncRNA downstream 389070 22549415 ~ 22549727 (-) True G63681
TU79826 lncRNA upstream 117444 23062058 ~ 23068200 (-) True G63799
TU79818 lncRNA upstream 123705 23068319 ~ 23070302 (-) True G63791
TU79827 lncRNA upstream 125787 23070401 ~ 23070820 (-) True G63800
TU79863 lncRNA upstream 227194 23171808 ~ 23182107 (-) True G63829
TU79873 lncRNA upstream 249530 23194144 ~ 23194529 (-) True G63834
AMCG00020504 mRNA downstream 7805 22917372 ~ 22930992 (-) True AMCG00020504
AMCG00020502 mRNA downstream 113858 22790453 ~ 22824939 (-) True AMCG00020502
AMCG00020498 mRNA downstream 149713 22777737 ~ 22789084 (-) True AMCG00020498
AMCG00020495 mRNA downstream 321978 22601940 ~ 22616819 (-) True AMCG00020495
AMCG00020494 mRNA downstream 350604 22583658 ~ 22588193 (-) True AMCG00020494
AMCG00020501 mRNA upstream 31053 22975667 ~ 22978624 (-) True AMCG00020501
AMCG00020510 mRNA upstream 88969 23033583 ~ 23037814 (-) True AMCG00020510
AMCG00020509 mRNA upstream 126236 23070850 ~ 23086811 (-) True AMCG00020509
AMCG00020511 mRNA upstream 219823 23164437 ~ 23168767 (-) True AMCG00020511
AMCG00020516 mRNA upstream 321393 23266007 ~ 23276284 (-) True AMCG00020516
TU79676 other downstream 394108 22543842 ~ 22544689 (-) True G63679
TU79413 other downstream 1626192 21312202 ~ 21312605 (-) True G63464
TU78822 other downstream 4898837 18037042 ~ 18039960 (-) False G62961
TU78814 other downstream 4922937 18006168 ~ 18015860 (-) True G62961
TU78823 other downstream 4941780 17994544 ~ 17997017 (-) False AMCG00020403
TU79847 other upstream 210078 23154692 ~ 23161900 (-) True G63819
TU80215 other upstream 1732133 24676747 ~ 24677810 (-) False AMCG00020561
TU80345 other upstream 2166496 25111110 ~ 25112551 (-) True AMCG00020581
TU80367 other upstream 2176484 25121098 ~ 25139385 (-) False G64247
TU80385 other upstream 2264445 25209059 ~ 25211063 (-) True G64260

Expression Profile