RNA id: AMCG00020504


Basic Information

Item Value
RNA id AMCG00020504
length 4215
RNA type mRNA
GC content 0.54
exon number 24
gene id AMCG00020504
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 22917372 ~ 22930992 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGTGTGCTCTGTCCTATGACTTTGTCCTCTCACAGAAGGAAAAGTTGTCCAGCTCCACTCTAGCAGCTCTAGACAACCTGGAGGAAAGTCTAGTGCAGCACAGTCCAGTTGGGGTACCAGTCACTCTAGAGGACTCGAACCTTGGCATTGCACTCAGCAGGCAGGATTTCTCAACCTTGCCTTTGAGCTCACACAGCCTCAACAAGCCATCTGACTTCAGCCTTACTTTTCCGCCTGCGCCTGCTCTTGAGAATATCATCAGCGATACTAAAGATCTGAGCCTACAGCTGGCATTGTTTCACTCCAACCCTCTGCCCACCTCAGCTCACACCTCCATCACTGGGCCAGTGGCTCGTGTCAGGCTGATGTCCAGGCAAAGAGAGCTCAGCGTCAGCGGACTTCAGCAGGACATCACGatctctctctccaggGCTGCTACCCAGAATTCCACAATTAAGGTGTTACCAATTGGGCGCAATATGACTGTGGCCCTGAATGTGACAACCCTCAACCAGACCTTGGTAGTGTGCATTGAGCCAGATACCCCCATCAACATGAGGATGTCCCTTGTTTTTGGGTCACCATCTCTAAATGGGATGAAACTAGAAAATGCCACATTCCCCCAGCCAGGGCTAACTGGAGCAGCAGCCTATACCTGGGTCCTGCCCTCCTCAAGCTTCTCTCGAGGCATGGGAGAGTACTTCATCACCATGACAACTGAGTCCTCCACCAATGCATCCACCCCCAGAACTGTGACTTACAGTGTGGCCACCTTCTTCACTGTCTGCCTGTTCTGGAACCACAGTCAGAATGACTGGATCACAGAGGGCTGCAAGGTTGGCCCACAGTCCTCCATGCAGGTGACTCAGTGTCTCTGTAATCACCTCACCTTCTTTACTACCTCCTTCTATGTCACACCCAACACAGTCAGCCTCCTGGATGCCGCCAAGCTCTTTGCAGAGGTCCCCAATAATCCAGCAGTTGTGATATTAGTGAGCGTGGTCATCGGGGTCTATCTGCTGCTCCTAGTGTGGGCCTGCATCAGAGACCAGCAAGACAGTGCCAAGATCAAGATAACATGCCTCTCCAATAATGACCCCTTCGCTCAGTATCGCTACCTGGTCCATGTCTACACTGGGTATCGCTGCAGGTCCTCAACCTCTGACAGGCCAGTGTTTGAGAGAGGAGGGGTGGACATGTTCCTGCTAACCACGCCCTTCTCCCTGGGGGAGCTGCAGAGTATCCGACTGTGGCACGACAACTCGGGGGACCACCCTGCCTGCTGGCTCTTTGCAGTGTGGGCTACACAGAGCATTGTGGACGGCCACCTGTGGCTGTCAGTATTCATCCGCCCGGCTCACAGCACCTTCTCCTCCGCCCAGCGCCTGTCCTGCTGCCTCTCACTGTTGCTCTGCTCAATGCTTTGCAGCATCTGGTACTGGGACACAAAGAGAAATAGCAGCAGTCTTCTCGAGGACCTGGGTGAGTACGCCTTCTCCTGGCAGGATGTGATGGTGAGCATCCAGACGTCACTCACCATGTTTCCCATCAACCTGCTCATTGTCCAGCTCTTCAGACTGCCCAAGCCACGCCCACCCTCACCCTCCAGAGGGGCAGTGTCCAAATCTGCCCAATCTTCATTGGACCCTGGCCCCATCTCTCCCCTGATGCAGCAACCCCACAGATGGGCAGACCAGGGAGATCCCTTCCTCCCCGCACAGCCTATGGGCCCTCCTCCTTTCCTCTCCATGCAGAACATCATCCGGGACCTGCAGTATCTGGCCCATCTGTGTGGGCAGGCCAGTGACCAGGGTGGCAGAGTACAGTCTGACATACACAATCTCTTCTCCCTCCTCTACTTGCTACAGAAGCAGCCCCAGTTGTGTTCAGTGAGCTTCCATGAGGATAAGTACTCCAGAGGTCCCAGTTTAAGGAGATATGCCAGAAGAGTGCTGAGCAGTTCAAAGATACAGATGTCACTGTTGGGAGCTGAGGTCTTCCCAAACATCTACGACTATCTGCATGCCTCAGAGTTGCTGGACAGACTGATCTCTAAACTAGGGTCACCAGAGGAACCCAATCACTGCTGCCCACCtgcttcaccccagctgccccACCAGCGCTGTGCTTTGCCCTGGTGGTGTGTGTACCTGGGCTGGCTAGCTGTGCTGGTCAGTAGTTTCTTCTCTGCCCTGTACATCATGCTGTTTTCCCTGAAAATGGGCCAGGTACAAGCAACACGGTGGCTGGTGTCTGTAACCAACACAACACTTCAGAGCATCTTCTTGATCTTCCCACTTAAGGTTCTGATGGAGGCACTGCTCTTTTCTATGTTGCGAAGGAAAGTGGTCAGTGAATGGGACAATGGCCTGCCTCCAAGAATCCCTTCCCCTACAGGGGAGACGGTGGGGTTTCGGAAGGATCGCAGCAGTCCACATTACCagccccctgcccccctgctGCAGCAGACAGCGTGGGACCTgtgggaagagaagagaaacatgTACATTCTCCTCTGGGACATATTAGTTCACATGGCATTCCTGTCCATTCTTTTGGTGGTTGTCTATGCAGAGAAGAACACGCATGAGTTTAATTTTCACTGTGCCATAAGAGGTACTGTCACCAACAAGCTACAGAAGGTGCAGAGACTCCAGGACTTCTATCCCTGGGCTAATGCCAGCCTCCTGCCCAGCCTCTATGGTCCGTACAGAGgGTTCATCTCTGACGGGAACTCAAAGTTGATTGGCAGCCCCCGGATCCGACAGCTGCGAGTGCGGGCCAGCCAGTGCCATGTGCCAACAGAGGGGTGGCAGAAGTGTTTCTTTCCCTACACCCCCCAGAACGAGGACAGAGCGGACTATGAGCCTGGTTGGAGCATCAACACCACTACAGCCCACACTGGGGCAGAACAGGCCTGGCTGTACTGTGCCCATGACTGCATGAAAGAGAGCACAGTGTGGGGCAGGCTGGCACTATACCAGGGAGCGGGGTATGCAGTGGAGCTGGGCACAGAGCTCTGGGAGGCTGAGAGGATGCTGACTGTCCTCTCTCAGCATGGTTGGTTGGATGCACACAGCAGGGCCTTGTTTGTGGAATTTAACATCTACAACGCCAATATCGATCTATTGGGATTCATCACACTGAGCCTGGAGACCAGCGGAGAGGGAGGTGTCTTCTCGTCTTTTGACCTCCACTGCATGTCACTGTATCTAAGTATGGGAAGCAGCTCGATGGCAGTTCACTGTGCCCAAATACTgttcatcatcttcatcttctACTACATGGTCAAGCAGTGTCTGGTGCTGAGAGAACAGAAGCTAGCATATTTCCAAGGCTTGCTCAACCTGCTTGAATTGTTGATTGTCCTGATGGGCTGGACAGGGCTGGGGCTCTTCATTGCCAAGGTGCTGCTGAGGCAGGAGTCTATAAACCAGTATCATCAGGACAAAACCAGGTACATCAGTTTCAGCCAAGCAGCCACCGTGGACAGGGGTGTCAATTACCTAATCGCCTGCCTGGTGTTGTTGGGCACTGTCAAGCTGTGGCACCTCCTGAGGCTCAACCCCCACCTGCATGTCCTGACCTCGGCTGTACGTCGTGCCTGGGGAGAGCTTCAGGTCTTGCTGCTCTTCATCTGTATCCTCCTCATGGCCTACTCCTTGACCGTGAGTGCCCCCTGCATGCAGGCCACAAAAGCTAAGAGCTACCGGAGACACGCAAGAttctcatttttttcttgtgatTGTCACCTGTTGTATGGCCATTATCTGAACTCCTACACCAGCTTCTACCGCTCATTCATCACGATGATCCTTCTGCTGATGGGCAGCTTCAACTACAGTGAGATACAGGACATCAGCCCAATCCTGGGGCCCCTGCTGACTGGCTCATGCATCCTGCTCATGCTGTTTGTGATGATGAAcctgtttgtgtctgtgctgctggTGTCGGTCAGTCAAGAGATCCACAACCCCACGTTAACCATTTCACTGCCACTATCTCTGAAGCCTTGCAAGCATGCTGTGATTGTGAAGGTGCTGCTCAGGAAGCTGGGCACTCTGATTGGGGACAACCTGCAGGAGAAGGCTGGGACCACAGAGAAGACAGGCAGTGAGAACCCCGAGAAAGAGACCGGCACAGCAGaagcacacaacacactcagCCGCAGACGCACAGAAACTGGTGTACATGTACTGCTAGGTGTGGGGTAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU79682 lncRNA downstream 364789 22552382 ~ 22552583 (-) True G63685
TU79681 lncRNA downstream 365069 22552000 ~ 22552303 (-) True G63684
TU79680 lncRNA downstream 365574 22551520 ~ 22551798 (-) True G63683
TU79679 lncRNA downstream 367205 22549947 ~ 22550167 (-) True G63682
TU79678 lncRNA downstream 367645 22549415 ~ 22549727 (-) True G63681
TU79826 lncRNA upstream 131066 23062058 ~ 23068200 (-) True G63799
TU79818 lncRNA upstream 137327 23068319 ~ 23070302 (-) True G63791
TU79827 lncRNA upstream 139409 23070401 ~ 23070820 (-) True G63800
TU79863 lncRNA upstream 240816 23171808 ~ 23182107 (-) True G63829
TU79873 lncRNA upstream 263152 23194144 ~ 23194529 (-) True G63834
AMCG00020502 mRNA downstream 92433 22790453 ~ 22824939 (-) True AMCG00020502
AMCG00020498 mRNA downstream 128288 22777737 ~ 22789084 (-) True AMCG00020498
AMCG00020495 mRNA downstream 300553 22601940 ~ 22616819 (-) True AMCG00020495
AMCG00020494 mRNA downstream 329179 22583658 ~ 22588193 (-) True AMCG00020494
AMCG00020493 mRNA downstream 337540 22552848 ~ 22579832 (-) True AMCG00020493
AMCG00020503 mRNA upstream 7805 22938797 ~ 22944614 (-) True AMCG00020503
AMCG00020501 mRNA upstream 44675 22975667 ~ 22978624 (-) True AMCG00020501
AMCG00020510 mRNA upstream 102591 23033583 ~ 23037814 (-) True AMCG00020510
AMCG00020509 mRNA upstream 139858 23070850 ~ 23086811 (-) True AMCG00020509
AMCG00020511 mRNA upstream 233445 23164437 ~ 23168767 (-) True AMCG00020511
TU79676 other downstream 372683 22543842 ~ 22544689 (-) True G63679
TU79413 other downstream 1604767 21312202 ~ 21312605 (-) True G63464
TU78822 other downstream 4877412 18037042 ~ 18039960 (-) False G62961
TU78814 other downstream 4901512 18006168 ~ 18015860 (-) True G62961
TU78823 other downstream 4920355 17994544 ~ 17997017 (-) False AMCG00020403
TU79847 other upstream 223700 23154692 ~ 23161900 (-) True G63819
TU80215 other upstream 1745755 24676747 ~ 24677810 (-) False AMCG00020561
TU80345 other upstream 2180118 25111110 ~ 25112551 (-) True AMCG00020581
TU80367 other upstream 2190106 25121098 ~ 25139385 (-) False G64247
TU80385 other upstream 2278067 25209059 ~ 25211063 (-) True G64260

Expression Profile