RNA id: AMCG00020511


Basic Information

Item Value
RNA id AMCG00020511
length 2058
RNA type mRNA
GC content 0.47
exon number 4
gene id AMCG00020511
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 23164437 ~ 23168767 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GCACTGTCTcaggtgagggaggaggagcCGGCGTCGGTGCAGGATTCACAGGCAAATGTGCTTGAGACAAatacagatgacaagaaaaccGAATGGTTATAGCGTGATTTAAATCCATTTGAAGAtgtggcatttgtttttttgaacggttgtttaaaataaataaatcgttCGTTTTTGGCAATTCAGTTTTGCAAGCCTCAAAGTCGTTGTATTGTAACCCTATTGAAGCTGGTGTGACGGCATCgctattttgttaaatatatggAATGGGAATTGAAGTGGCGGTCAAACACAGTTTTGTTTGATCGTGTTCGCGTCGCAGATTACAGGTAGATCACGCATGCGTAAACGGTTTCGTTTGAGGCACAATAGCCGGGTTTCGGTCATCTGTGCCACTTGTATCCGAGCCAGAGATGGCATCGCTGCGCTTGCCTTGCCGACTTTACAAGGCAGGTTATTAAGTGAGGACTACGCAAAACAAAGACGCTAAGATGCCAGAAGGTGGCAAATATTACGGAAGGGATGAGTATCTGCCCCACAGCCGGGATAGAGATGAGAGAGAAGACCACCGAGACAGGGACCGCAATCGAGACAGGGACAGGGaaagggacagggacagagctCGGAACACAAGAGACCAGCGCTACCGAGACCAGAGGGACCCTGGGTACCTGGACCGGATAGACAGTGACCATCTCGATAGGCAGAGGAACGGGGGCAACGATCGGGCAGCTTTCTCTCACCGTGATGCCCATGACTACAGAGAGCCTCGTCACCACAAAGGCCGGCCTGCTCACTACAAGGAGGAAATGTACAGTGAAGATACCTCGATGCCCCCTGAAGAAATTATTGAATATGAACCCGAGCCTTCAAATGGGCTTTACGACTGCTACAACTTCAGATACATTTTGACCTGGAGAGGCCTATGTCATGTTATGGAAGTCTTGCTGAACTTGCTCATAATCATCTGTGTTGGGGTATCCTACAGTGCGTCAGGGGTATATAGAGACCTGGCCAGCCTGGGGGGCCTTTACGCCTACTATTTTGGGGGAGCCAATGCCTTCACTGGTGCAGAGGCAGATCGTGTGAAGGCGCTGGATGCCCAGTTCTACCAGCTGAAGCTGCCAATTTATGTTGCCAGCATGGCGCTTGGGGGAGCGGTGATGAGTTATGCCTGTCTGATGCTGGTGCTGGGTGTGCTGCGGGTGCCCTTCCGCTGGCCCCACGTCCTCGTGGTGGAGGGGATCCTAGACGCCCTCATCGGCCTGGGCTACCTGCCCGCGCTCGCCTTTTACTTCATAAAGCTGCAGCAGGCCTACGACTCGCCCACCTGCAAGGAGAGGCAGACACTGTATGAGAGTAAAGGCCACCAGGGCTTTGGCTGCACGCTCAACGGGGGTGACATCGTTGGGGGGCTTTTTGGGGTGCTGGGGGCCGTGATTTTCCCTCTCAGTGCAGTCTTGGCCTTCCGAGCTTTCCGGACGGTGTGGGAACTCAAAAAGAAGCCACCCCAGCATCTGCAACTTTAAGAGGATTCCTCCATTTTACACAGCAGCTGTGGAATGTTAGTGCATACGTCTAGTTGACAGACATTCAAGATTAGGTTGTGTGTTAATATGAAAGCTTCTGGTGGCCTTTCAGGATCAGGAACTGGGTTTTGCAGAGATATaccatatatttacattaaaactaGTGTGTAGATCCAGAACAGTCACTAACGTCAACATTTaagtcattttgtttctttttttttatttaatcacaagATTTCcgttttgtaaatgtaattattcataatattatgtAAGTTTCCCTTTCaagattttgatttgtttatatttgatgCAGTGTCCAATATCAGAATGTGAAGAATTTGTGGTATTTTTGTAACTGTGCTGTAAAAGTTTTACACAGAGGAAAATTACAGGGGAAATTGCAAATTCTATGATAGATATTTCAGCAGAAAGTagtatttgtttggtttcattGCAATGAGTATAATTCTGTAGCCtatgattttatattatttttgcaatgtttttaaactaaataaat

Function

GO: NA

KEGG:

id description
K21099 MARVELD3; MARVEL domain-containing protein 3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU79827 lncRNA downstream 93617 23070401 ~ 23070820 (-) True G63800
TU79818 lncRNA downstream 94135 23068319 ~ 23070302 (-) True G63791
TU79826 lncRNA downstream 96237 23062058 ~ 23068200 (-) True G63799
TU79682 lncRNA downstream 611854 22552382 ~ 22552583 (-) True G63685
TU79681 lncRNA downstream 612134 22552000 ~ 22552303 (-) True G63684
TU79863 lncRNA upstream 3041 23171808 ~ 23182107 (-) True G63829
TU79873 lncRNA upstream 25377 23194144 ~ 23194529 (-) True G63834
TU79875 lncRNA upstream 34203 23202970 ~ 23205921 (-) True G63836
TU79897 lncRNA upstream 110025 23278792 ~ 23279073 (-) True G63858
TU79973 lncRNA upstream 744095 23912862 ~ 23913221 (-) True G63921
AMCG00020509 mRNA downstream 77626 23070850 ~ 23086811 (-) True AMCG00020509
AMCG00020510 mRNA downstream 126623 23033583 ~ 23037814 (-) True AMCG00020510
AMCG00020501 mRNA downstream 185813 22975667 ~ 22978624 (-) True AMCG00020501
AMCG00020503 mRNA downstream 219823 22938797 ~ 22944614 (-) True AMCG00020503
AMCG00020504 mRNA downstream 233445 22917372 ~ 22930992 (-) True AMCG00020504
AMCG00020516 mRNA upstream 97240 23266007 ~ 23276284 (-) True AMCG00020516
AMCG00020521 mRNA upstream 703647 23872414 ~ 23899771 (-) True AMCG00020521
AMCG00020523 mRNA upstream 750944 23919711 ~ 23923789 (-) True AMCG00020523
AMCG00020524 mRNA upstream 812593 23981360 ~ 23982883 (-) True AMCG00020524
AMCG00020525 mRNA upstream 825621 23994388 ~ 24015767 (-) True AMCG00020525
TU79847 other downstream 2537 23154692 ~ 23161900 (-) True G63819
TU79676 other downstream 619748 22543842 ~ 22544689 (-) True G63679
TU79413 other downstream 1851832 21312202 ~ 21312605 (-) True G63464
TU78822 other downstream 5124477 18037042 ~ 18039960 (-) False G62961
TU78814 other downstream 5148577 18006168 ~ 18015860 (-) True G62961
TU80215 other upstream 1507980 24676747 ~ 24677810 (-) False AMCG00020561
TU80345 other upstream 1942343 25111110 ~ 25112551 (-) True AMCG00020581
TU80367 other upstream 1952331 25121098 ~ 25139385 (-) False G64247
TU80385 other upstream 2040292 25209059 ~ 25211063 (-) True G64260
TU80401 other upstream 2073402 25242169 ~ 25242511 (-) True G64271

Expression Profile