RNA id: AMCG00020516


Basic Information

Item Value
RNA id AMCG00020516
length 2601
RNA type mRNA
GC content 0.48
exon number 10
gene id AMCG00020516
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 23266007 ~ 23276284 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AGCAAATATGAGGTGggcatatctctctctctctcttttgctcgTTCTCTATCATGCGCGCTCGACAGATAGGTAGCTAGAATGGGCCAAAGTCTCACCAACactgattttgaatgtttgcAGTGAAATGAAGAAAGATAAACTGTGAGACTCAAACAATAACATGACTGGAACGAGAAGAGACTTGAAATAGTGTCATTGAGGGCTtgagactgaaaaaacaaatggaggaagacaaaggaaagactgtttgaaaaaagaaacagaaaataagaatacaagAGGAGGGGGAGTGAAAGGAGAAACAGTCAACAGAGGTGTTTTTTATACTGAAGACTTGAGAGGGGACACCTCTGTTTCTCTTCGAATCTTTGGGTCCTCTGCAGAGCTTTGGCATTGCTGGTGCACCAGTGAGAGCTCCAAAAGCAAAAGGCAGGACAGGGCTTACTGTACTGCCACAGAACGTACGCTTCTTTCAGCAGGGTGCTCTGAAGTGCACTGGACGGACGGGCTTGGTCTACTGTACCAGCCAAGCAACTTCGGGGCATCATGAAATTGTCTGGGACTGTACTAGACCTGAACACAGCTGACTACACCATGACTCTTGACCCCTCCTACAGCCTTCTGGAATTTGACAGTCTGAGAGTCCTTCCAGTGGAAAGTGATACCCTGATGCCAGAGCCGATACCTCTGATGCCCAAATCCAATGGCCAAGCAGTGTCTCTGTGCTCCATCTGTGCTGACCGAGCCACTGGGAAGCACTACGGTGCAGCCAGCTGTGATGGCTGTAAGGGTTTCTTCAGGAGGAGTGTCCGCAAGAACCACGTCTATACCTGCAGGTTCAACAGGCAGTGTGTTGTGGACAAGGACAAGAGGAACCAATGTCGCTATTGTCGCCTACGCAAGTGTTTCAGAGCAGGCATGAAAAAAGAGGCTGTACAGAACGAGAGAGATTGGATTAGCAGTCGCAGAGCAGGTGGAGGGGAGGCGGGGTCTCTCTCAGTCAGCGTTCTGGTGCAAGCAGAGGCTCTGGCTCATCAGTTCTCCCCGCTGAACCCTCACCCTGCCACTGAGAGCGGCCCTAAGAAGATCGCCAGTGTGGTGGATGTGTGCGAGTCCATGAAGCAACAGCTGCTCCTATTAGTGGAGTGGGCAAAACACATCCCAGCGTTCTGCACGCTCCCACTGGACGACAGGGTGGCCCTGTTACGAGCCCATTCTGGGGAGCACCTGATCCTAGGTGTGGCTCGCCGGTCTCTGCCCTATGATGACATCCTGTTACTGGGAAATGACTTCATTATTCCAGTTAGCGGGCCAGAGCCTGAGGTGTCACGGGTGGCGGCTCGTATCTTGGAGGAGCTGGTCAGGCCCCTGAGAGAGCTGGAAATCAACAACAGCGAGTTCGCCTGCCTCAAAACCATCATCTTCTTCGACCCCGactgtCCAGGGCTAGAGATGGGCCAGGTGGTGAAACGGCTGCGGTTCCAGGCCCAGGTCCTACTGGAGGAGGCCGCCAGCGAGCAGCGTGGCCGTTTCGGGGAACTACTGCTTCTGCTGCCCCCCCTGCAGAGCGTGGCCTGGCAGATGGTGGAGCAGCTGCAGTTGGCCAGGCTGCTGGGGGAGGCCAGCGTCGACAGCCTGCTGCAGGAGATGCTGCTCGGAGGGACAGCTGGGAGGGCAGGAGCAGGAGTCAAGCCAGCCATGCTAGAATTTCCACCTGGGGCTCCCTCACTGCCCCAAGATGTCCTGGAAGCACATGTGATGTTGCCAGGCAACCTCACTTCTGTAATCCTCCCTGTACCACCATctaTTTCAGAGATAGCTCTCCCACCTTCACAGATGGGCGCCGAGGTGTACACACATGGAGAGGAAGGCCAGAGCCTAGCTATGCCACCAGTCCACACCTGCCTCTGAAATTACAGGGAAGTAAAGATACCACTTCTGGAAACAAAGTCCAGACAGCAGACACACCAGCAAGGCACCTGAGCACAGGGataatgatttgtttaattatgaactgaattcaatgtattttatatttttgaatgatgACTGTAAATAGCAGTGTATCGGATGTATATTCACTacttaacaaaaacattagaCTTGATATGGAGTTACTAAAGTACAAAACAGTAAATTGTCAGTTCAATATCCTGGCAAGAGCTGtgtatttcagtttcagttgaTTGTACTGCAGTTAACAAATCATTTGTTAAAAATTGTTTTTACTTCTATGTAAGCATAGCAACATGAAAggcttattttctttaaagatgtactaaattaaatgtctcCCACTTCAGTTTAGAATAAACAttctttgcaaaaataaactataatgaTTTAAAGTAGTGATCGTTTTATATTGATGCATTGGCAAGAATGCTTTTGGTATTTATGTGAAGGCCTACATGCACAAAACCACAAACGCCACTAAAATGTAGTTATTGCATTGCAAATGGCAACCACCCAAAAAGCTGCGTATGTTCAAGGAAAGAGTGCAGTATTTTCAATAACGCAGACAGATCAGAAGTAAatgaaataatgcataaatggagtttcaatatttaattgcaatgtTTCAAAACTGCCAACAGA

Function

GO: NA

KEGG:

id description
ko02010 ABC transporters

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU79875 lncRNA downstream 60086 23202970 ~ 23205921 (-) True G63836
TU79873 lncRNA downstream 71478 23194144 ~ 23194529 (-) True G63834
TU79863 lncRNA downstream 83900 23171808 ~ 23182107 (-) True G63829
TU79827 lncRNA downstream 195187 23070401 ~ 23070820 (-) True G63800
TU79818 lncRNA downstream 195705 23068319 ~ 23070302 (-) True G63791
TU79897 lncRNA upstream 2508 23278792 ~ 23279073 (-) True G63858
TU79973 lncRNA upstream 636578 23912862 ~ 23913221 (-) True G63921
TU80090 lncRNA upstream 956432 24232716 ~ 24233398 (-) True G64012
TU80091 lncRNA upstream 957358 24233642 ~ 24235127 (-) True G64013
TU80111 lncRNA upstream 1028200 24304484 ~ 24304935 (-) True G64028
AMCG00020511 mRNA downstream 97240 23164437 ~ 23168767 (-) True AMCG00020511
AMCG00020509 mRNA downstream 179196 23070850 ~ 23086811 (-) True AMCG00020509
AMCG00020510 mRNA downstream 228193 23033583 ~ 23037814 (-) True AMCG00020510
AMCG00020501 mRNA downstream 287383 22975667 ~ 22978624 (-) True AMCG00020501
AMCG00020503 mRNA downstream 321393 22938797 ~ 22944614 (-) True AMCG00020503
AMCG00020521 mRNA upstream 596130 23872414 ~ 23899771 (-) True AMCG00020521
AMCG00020523 mRNA upstream 643427 23919711 ~ 23923789 (-) True AMCG00020523
AMCG00020524 mRNA upstream 705076 23981360 ~ 23982883 (-) True AMCG00020524
AMCG00020525 mRNA upstream 718104 23994388 ~ 24015767 (-) True AMCG00020525
AMCG00020527 mRNA upstream 775738 24052022 ~ 24055568 (-) True AMCG00020527
TU79847 other downstream 104107 23154692 ~ 23161900 (-) True G63819
TU79676 other downstream 721318 22543842 ~ 22544689 (-) True G63679
TU79413 other downstream 1953402 21312202 ~ 21312605 (-) True G63464
TU78822 other downstream 5226047 18037042 ~ 18039960 (-) False G62961
TU78814 other downstream 5250147 18006168 ~ 18015860 (-) True G62961
TU80215 other upstream 1400463 24676747 ~ 24677810 (-) False AMCG00020561
TU80345 other upstream 1834826 25111110 ~ 25112551 (-) True AMCG00020581
TU80367 other upstream 1844814 25121098 ~ 25139385 (-) False G64247
TU80385 other upstream 1932775 25209059 ~ 25211063 (-) True G64260
TU80401 other upstream 1965885 25242169 ~ 25242511 (-) True G64271

Expression Profile