RNA id: AMCG00020523


Basic Information

Item Value
RNA id AMCG00020523
length 3575
RNA type mRNA
GC content 0.41
exon number 2
gene id AMCG00020523
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 23919711 ~ 23923789 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TTATTGTGGTGGACGCAGTGTTTAGGGATTTTGGCTTTGTAATGTAAACTGAACTGGGaaaagtgtgtgcatgtgtcctAGGGACTTGTAtttgtgtcatgttttgttCACTGCTATTATCTTAGCACATTCATTACCATACAACACAAACTAGCAGTTTTTTAAACGCAAGCATGTTTCCCACCCCGAATGCATCTCTGGAAGCCGCCAGCTCTGCGGAGTGGAATGTAACCAACGCGGAACTGCGGAGATACGTGGAGTTAACGCACCGTCCCGTCAAGATCTGTATCATATCGGTTTTGGGAGCTCTGACTGTCTTGGGCAATGTGGCTGTGATTTGGGTTATTGCTTCTTCCGTGAGTGGATGGTCGAGAAACACCCGTTATTGCTTAATTTCTCTCACCGGGGCAGACGCTGCCCTAGCACTTGTCTTGATGCCGTTGAACCTCCATGTGAGCCTCATGAAGGACTACAGAGAAGACCCTGACGCGTACTGCCATGCTGTTGCATTCCTCAACTCCACCATCTATGCTACTTGCATATATGCGCTGACGACCATCAGCCTTGAGAGATACATAGCCGTGTTTTACCCtttaaaatacagcacactGATGACCAGAAAGAGGACCAAGGCTCTCATAGCATTCACTTGGTTCTTCCCTCCTGCTTTGCTGTTGCCAATTTCAATTCCCAATGGGATTATCAAAGTGTACTTCTCCAGCGCGTCCTTGGTCTGTAACCCGGCGTATTCGAGCAATGTCCCTTATTCCCTGACTCTAACCGGGCTGATCTTTTTCCCGGGTTCAATCATCATGACTTACGCCAATTTGCGGCTCTGGTTTGCTGCCAGGAGACAGAGGAACAAACTGAGAAACCACAACCTTGGTGGCCGCAGCAGACCGGACTCGGCGTCCCGGGTGTTGGTGCCAGTTATGATCGTGTACTACACTTGTTGGACGCCATGCATGGTAACCATCCTGTACACTGCCATTTCCGGAGCCAGGGTTCCAGAGTGGATAGAGTTTGTGGCTGTTTGGCTGCCCAGTGCCAATGGCTTCCTCAACTGTATAGTCTATTTCTGGATCAACCGCAGCTTTCGCAGAAAGTTCCATCTGCTGGGGAGAAGACTGTGCTTCGGGCAGTGCCTGGGAGTGGGCAAGGCTGTGGGCTACAGAGTGCCGGGGGGGATCACGGTGGTCAGCAGAGTCTGGGACAACAACAACTCCCTGCCAGAGCGTTCCTGCAGTGTCTCCTCGAACTGCACTCTGTTGACACGAGCTACCGAGAGCTACATATGAGGACCAGGGTCTAGGAAGTCTTCTCCCAGCTCGCTGCATTGCAGTCATATGTAACTGATGGGCTCCATGGAGAAGCCTTGAAGGGGCAAAGCAAGGAAGCTAAATTGTGCAGCAGGATCAATAGTATGACATCCTCTGAGGTTTTGTCGTGACCTGCACTTTGGCCTACCTtgcttaatacatttataaaactacCCAAAAGTGAGAAATGTCCCATCTTAAACTGAGTGGACACTGCGACAGTGCTGCAAAGTTGAGCCTCATGAAAACCTTCTACTCCTCTGCTTTAGAGTACCATGTGGCTTTGGATTTGGGGATTTCAtccagttatttttttcttgtaatgtttgtgattttataACTTCATCCCATTACCTTCTTATTCAGTCACTTGTCACATTGTCCAAATCGTTTGGATTAAATGTTTCCAGGATACCACCTGGTGCTGAGGATGTCTGCAAACGATCTATCAGTAGAAGTATTTTTTCTGAACTAAATTAATCTCTGAGCACCTTGGGAGATTTGGtcattagagaaaaaaaaaaagtttgcaaaaaaagaaaaaagggaaagatgCCTTCATTAACTGACTATATGTGGTGAAGGCCAAATTAATCAGATTAGACCGCTGTTAATGTCCTTCCATTCACTTCCACTCCGTTGGATGAAATGTGTGCTATTTAGATCTCGTATTTCATGTGCATATAGAATTCAGCTTTTGATTGCTTCAGATATCGAAATGTGGCAGCACTGCAGTTCTCAAGGTACTCTGCTTGTGCTATGACAATCCTAAACTAGACCTTCCTGACTAAATAACTTATGGTTGCCTCCTCCGCCTTGTTTTTAGTGATTTTGTTGGCAGGCCACATTTTCATCCCATATTTGTCATCACTGGTCATGTTTACAGTTCAAATGAGACACTTCCAGTTATTTCATAgcacattttgttctttttttttgtgtgtgtttttgcagagCATGTTTTGTATGATCCCTGCACTTTGCAcgtttgcaaatgtatttctatgtCTCGGGCAGAGCCGCATGATGTTTAATGCATATCGACCCTTCCTACTAGGAAAGTAGGATCCATTAAGTCCTATAGACTTCTAATGGCAAGTGCTTGGCATGCTCTAAGCCCCTAGTGCTGCTAAAGCAAGTATATTCTCTTGCCCAGAATTCAGTGTCAGAGCATGTCTGAGGGTTCAGTTgtaaattgttttgaaaacctttttacATCTAAAATTCTAAAAagcttattaattataatatagaGCACTTTACAATTAGCTGCTACATCTGTCTGTACACAATCTTTTtatctctctttattttttatttttaagtgcttCTGTTGTTTGGTGTTTGAGTATACCAGAGTATTAGGAGTTTTGTAAACCATTATGCTGGAACTATAACCGTTAAACCACAGGTAATTGCATTATAGTTTATTCAAAGCAAATGTAATTTAGCAGTTACATTGGAAATACCAGGTTTAAGATCTAGCATACTTGTGGTTGTTCACTTAAAACAATAACTTCAGGCTTGACATGTTGCATGAAATTAGCCAATCAAATCAACCGCTTTATGTTAATCTTTTTCTGCAGCACTCATTCTTCCCTCTACCCACTGCCTCCTTAGTTGTGAACTATTGGCTTTGTTATTTTGTCTGGCATCTTCATGACATGTTTCTGCAGACTCCCCCCCTTCGAGTTTGATTGTTTGAGACCGAAAAATAAGAGCCTTACCCAATTAGGCATTGAAGTCTGTGACCAGCATCTGATGGCAGTTTAGTTGTGTAGGGATTCAGCactgtgaaatataattttaagatGTACAATTGAAACCTCTTCTTCCTGTTAAAATCTGCATAATGCTGACtttttagcatttgttttaattaaatattttatacttaaaattaTTTGCAATTCACTACCAACATGTTGGCAAATGGTTATATCAGTGCAAAAAGCGGTTTCTCACTCCCAAGCTCCCCACCCCCAACTTTTACTGCATCATTTGAATAAAGATATACATATCAGTATTAAGACAGACCTATTTTTGACGCAGCTTTACTGAAAATGCATGTATTAGTGTTCTTTCAAAAATGGGTGTtaaaaatattgtgtatatagCAATACAAATtttatattgaatatgtattaaaatatttaaatatgaacaaaattgtaatgtcatttaaaaatgtgcatgtacTTTTTCTTACTATAAAACTTGaatttgtatgaaaataaaGCTTAATTTCATAGTTCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU79973 lncRNA downstream 6490 23912862 ~ 23913221 (-) True G63921
TU79897 lncRNA downstream 640638 23278792 ~ 23279073 (-) True G63858
TU79875 lncRNA downstream 713790 23202970 ~ 23205921 (-) True G63836
TU79873 lncRNA downstream 725182 23194144 ~ 23194529 (-) True G63834
TU79863 lncRNA downstream 737604 23171808 ~ 23182107 (-) True G63829
TU80090 lncRNA upstream 308927 24232716 ~ 24233398 (-) True G64012
TU80091 lncRNA upstream 309853 24233642 ~ 24235127 (-) True G64013
TU80111 lncRNA upstream 380695 24304484 ~ 24304935 (-) True G64028
TU80220 lncRNA upstream 761735 24685524 ~ 24687760 (-) True G64120
TU80224 lncRNA upstream 769853 24693642 ~ 24695563 (-) False AMCG00020559
AMCG00020521 mRNA downstream 19940 23872414 ~ 23899771 (-) True AMCG00020521
AMCG00020516 mRNA downstream 643427 23266007 ~ 23276284 (-) True AMCG00020516
AMCG00020511 mRNA downstream 750944 23164437 ~ 23168767 (-) True AMCG00020511
AMCG00020509 mRNA downstream 832900 23070850 ~ 23086811 (-) True AMCG00020509
AMCG00020510 mRNA downstream 881897 23033583 ~ 23037814 (-) True AMCG00020510
AMCG00020524 mRNA upstream 57571 23981360 ~ 23982883 (-) True AMCG00020524
AMCG00020525 mRNA upstream 70599 23994388 ~ 24015767 (-) True AMCG00020525
AMCG00020527 mRNA upstream 128233 24052022 ~ 24055568 (-) True AMCG00020527
AMCG00020526 mRNA upstream 139103 24062892 ~ 24068509 (-) True AMCG00020526
AMCG00020540 mRNA upstream 151084 24074873 ~ 24085010 (-) True AMCG00020540
TU79847 other downstream 757811 23154692 ~ 23161900 (-) True G63819
TU79676 other downstream 1375022 22543842 ~ 22544689 (-) True G63679
TU79413 other downstream 2607106 21312202 ~ 21312605 (-) True G63464
TU78822 other downstream 5879751 18037042 ~ 18039960 (-) False G62961
TU78814 other downstream 5903851 18006168 ~ 18015860 (-) True G62961
TU80215 other upstream 752958 24676747 ~ 24677810 (-) False AMCG00020561
TU80345 other upstream 1187321 25111110 ~ 25112551 (-) True AMCG00020581
TU80367 other upstream 1197309 25121098 ~ 25139385 (-) False G64247
TU80385 other upstream 1285270 25209059 ~ 25211063 (-) True G64260
TU80401 other upstream 1318380 25242169 ~ 25242511 (-) True G64271

Expression Profile