RNA id: AMCG00020524



Basic Information


Item Value
RNA id AMCG00020524
length 390
RNA type mRNA
GC content 0.56
exon number 3
gene id AMCG00020524
representative True

Chromosome Information


Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 23981360 ~ 23982883 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


GTTTCTCATGACTTCGCCATTAATTTCAACCCAGACGATGATGAATGTGAAGGGATCCAGGGGGTGGTGGAGGCGTACCAGAGTTGCCTTCCCAAGATCCAGCTGTACGGACCGACCAATGTGGCACCCATCATCACCAGGGTGGCCAAGCTGGCATCTGGGGAGGAGAAGTCCAAAGATGCATCACAATACCACATCCTGCTGATCCTGACGGACGGTGTGGTTACTGATATGGCGGACACGCGTGAGGCCATCGTCAGGGCCTCCTACCAGCCAATGTCCATCATCATTGTGGGGGTGGGCAACGCAGACTTCACCGACATGCAGATCCTGGATGGAGATGACGGGGTCTTGCGTGCGCCTAAGGGAGAGCCAGTCCTGAGGGACATT

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU79973 lncRNA downstream 68139 23912862 ~ 23913221 (-) True G63921
TU79897 lncRNA downstream 702287 23278792 ~ 23279073 (-) True G63858
TU79875 lncRNA downstream 775439 23202970 ~ 23205921 (-) True G63836
TU79873 lncRNA downstream 786831 23194144 ~ 23194529 (-) True G63834
TU79863 lncRNA downstream 799253 23171808 ~ 23182107 (-) True G63829
TU80090 lncRNA upstream 249833 24232716 ~ 24233398 (-) True G64012
TU80091 lncRNA upstream 250759 24233642 ~ 24235127 (-) True G64013
TU80111 lncRNA upstream 321601 24304484 ~ 24304935 (-) True G64028
TU80220 lncRNA upstream 702641 24685524 ~ 24687760 (-) True G64120
TU80224 lncRNA upstream 710759 24693642 ~ 24695563 (-) False AMCG00020559
AMCG00020523 mRNA downstream 57571 23919711 ~ 23923789 (-) True AMCG00020523
AMCG00020521 mRNA downstream 81589 23872414 ~ 23899771 (-) True AMCG00020521
AMCG00020516 mRNA downstream 705076 23266007 ~ 23276284 (-) True AMCG00020516
AMCG00020511 mRNA downstream 812593 23164437 ~ 23168767 (-) True AMCG00020511
AMCG00020509 mRNA downstream 894549 23070850 ~ 23086811 (-) True AMCG00020509
AMCG00020525 mRNA upstream 11505 23994388 ~ 24015767 (-) True AMCG00020525
AMCG00020527 mRNA upstream 69139 24052022 ~ 24055568 (-) True AMCG00020527
AMCG00020526 mRNA upstream 80009 24062892 ~ 24068509 (-) True AMCG00020526
AMCG00020540 mRNA upstream 91990 24074873 ~ 24085010 (-) True AMCG00020540
AMCG00020539 mRNA upstream 108851 24091734 ~ 24120738 (-) True AMCG00020539
TU79847 other downstream 819460 23154692 ~ 23161900 (-) True G63819
TU79676 other downstream 1436671 22543842 ~ 22544689 (-) True G63679
TU79413 other downstream 2668755 21312202 ~ 21312605 (-) True G63464
TU78822 other downstream 5941400 18037042 ~ 18039960 (-) False G62961
TU78814 other downstream 5965500 18006168 ~ 18015860 (-) True G62961
TU80215 other upstream 693864 24676747 ~ 24677810 (-) False AMCG00020561
TU80345 other upstream 1128227 25111110 ~ 25112551 (-) True AMCG00020581
TU80367 other upstream 1138215 25121098 ~ 25139385 (-) False G64247
TU80385 other upstream 1226176 25209059 ~ 25211063 (-) True G64260
TU80401 other upstream 1259286 25242169 ~ 25242511 (-) True G64271

Expression Profile