RNA id: AMCG00020538


Basic Information

Item Value
RNA id AMCG00020538
length 5206
RNA type mRNA
GC content 0.43
exon number 9
gene id AMCG00020538
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 24308242 ~ 24328823 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CCCAGGCGCGCAGAGCACCGGCGGAGAGACAGGGTGCGCGGATTAGCTGCGGTGATGTAATGTTTCTCCTCTAGTGAGTACGGATGGCGGTGTGTGCCAGGCTTTGCGGAGTGGGGCAGTCGCGGAGGTGCAGGAGGCGACAGCGACAGAACCAGCGGGATCAGGACACCGACCCCGAGCTGGAGATggacgaggaagaggaggagcggATAGTGGGGAAAATGCAAACGGAGGCCGGTCCGCGGTGCCTGAGCGACTCCGCTGCCGCAGCTGCGCCGGGGCCGGGAGTAGCAGGTGTGTGCTGTACGCCAATGACAGCCACCAGCGTCAACAACAGACTCGGAACCGGGCCTGCGGGCTGCAAGGGGCCGGCGACTGCCAACTCCTTACTGGACCTGCCGCCGGAGCTCCTGGTCGAGATCTTCGCCTCCCTCCCCGGGACGACGCTACCGAATCTGGCTCTAGTGTGCAAGAAATTCAGGCAGATCCTTAATACAGAAACCATCTGGAGAAGACGATGCATTGAGGAGTTTGGGATGCACGAAGACCTGAGGAAGGTGGAGGTAGTGGGTATGGCCAGCAGGGAGCTGTATGTGAAACTGTTGCACCCATACAGACATATTCTGGGCTTGTGGCAGCCTGATATTGGACCGTACGGAGGACTGCTTAACGTTGTGgtggatGGTCTTTTCATCATTGGCTGGATGTACCTGCCGCCCCACGACCCCCGTGTGGACGACCCCATGAGGCGCAGGCCCCTGTTCCGCATCCACATGTGGGAGAACAGCAAGGCCACAGTGGAGTGCATGTACGGACACAAGGGACCCCACCAGGGAGACATACAGACTGTAAAGAAAGATGAGTTTTCCACCAAATGCAACCAAACTGATCACCACAGGATGTCTGGCGGAAGGCAAGAGGAATTCCGCACGTGGTTGGAGGAGGAGTGGGGACGCACTCTGGAGGACATTTTCCATGAGCACATGCAAGAGCTCATCCTCATGAAGTTCATCTACACCAGCCAATACGATAACTGCCTGACCTATCGGCGCATCTACCTCCCCCCTCACCAGCCCACAGACCTGCTCCGGCCAGGGCTTTTCAAGGGGACATATGGAAGTCATGGGCTGGAGATTGTCATGTTCAGCTTCCACAGCACTCGAGCCAAAGGCACCAAACTCACTGGAGACCCCAACGTCCCGGCAGGCCAGATGACTCTAGACATCGACCTGTCACGACCTGTGCAGCTCCCCGACCTGGAGCAGCAGCGCAGCATCGAGGAGCTGTCCCGGCTGGTGCTGGGCATTCATGAGCAGGTGCAGCGGGAGCAGGCGGAGTGCGAGGCCCGTGGGGGCGACGGGGGGCAAGAGGCAGACACGGATGCCAACCCCCCCCAGGAGTGCAGACAGAGGCAGGAGGCTGAAGCTGAGGGAGCAGCAGGAGGAGAAATGGGGCTGGAGAACGCCCTGCAAGATGAGCCTACTGGTGCTGCTTCAGAGGCCAGGCCGATAGAGTCTGAACCCCTGGCCTTTGTGTTGCCACTGGGGGTGATGGCCCGCACTGAGGTGTACCCGCGCACCTGCAAGATGTGTTTCTACGGCACGGGGCTAATAGCTGGCCACGGCTTCACCAGCCCAGAGCGCACACCCGGGATGTTTGTCCTCTTCGATGAAGACCGGTTCGGCTTCATCTGGCTGGAGCTGAAGTCCTTCAGCCTGTACAGCAGGATCACAGATACACTGCCTTACGCTCAGGCCCCATCCATGGAGTCCTTCGAAGAGATGCTGAAGAACATGCAGTCCTGGACATCATGACAACCTGCGCTCCTGACCAAgtgactgaaattaaaataaataaataagagagatggaaagaaaaaaggaaatatatcgTGAGTTGACATGAAACAAAACCTTGACCTCTGTACCTCTCCATAGAAGCATGCACTTtgacacaaatgcaaacaccgctttttaaaaagtttgaTTACTCGAAGGCCGAAATAAAGAGTACACCGCAAAAAGATATCCCGCCAGCTACAAAGTCAAGTTCTGCAAGTTGTGTGAGCTTCCAGTttgtaatcaattaatcaaagcttgttccaagtgaaaaaacaaaaccgaacaTATAGTATTAAGCAAAGACTAAAATCAGAGTTTTcaatttctctttcatttcaaTCTTTGTAGTATAATCATCTGTGAATTCTTAATTAGCAGTTTTACAGATAGTCTCACGCACCTGGATTAGCATTTATCCTGGTCAACCCTACCCAAATTGACATTGGATAGTCATAGACTGGTACTAATctaggtctgtgaaaccagccctgaGACAATAAgggttatttttttactttctcttcagaaattaatatatatgtatatcaatatatatatatatatatatatattaggactGGGATGGCTTTCAAAATATGTAGAAAGACACTTGTATTACAGgaaattttaattaacaaatggaATAATCTAGGTAAAGAATGACTTAAAATTTATGAGAACCTTTGCGCAGGGTAAAGACTAATCCACTTCCGTCAAACTCTGAAAGTCGatatgacaaaaataatgaaaacctaTCACCTTTTAGCCATTTTAAGTGCAGTCCctttgagtttttttatttataatcactTTTGTTGGtgaaatgttcagtttttaggattttgttgtttgtatgtTCAGATACAGcacttattttttgttctggGTTAAAGTATATTATCGCTATGCCTATGGATTTTGTTTCTTGCACTACATTTTGTGGCTTCTACCAAACCAGAGCAGCATGCTGGGGCCTGCCAGTTGATGGTGCTCAAACAAAGCCTCACTGCCCAGGAACCAAGACAGCGGTCTTGCAGGCTAAAcacaatctgtttttaattttttattcctgggttgcttttgtatttgattttaatgctCATCCTGACAGCTACGATGATGCAAACAAATTACATGATGCTATCTGATACTAATTTGTGGTGATTAGAAACAGGtctgaaatacttatttttttgtgtgcgtgtaGTTTAGCCATTTTAGTTTGGGACTTTTCCCACATTTTGTTGCTATTTTCGTGAATCAACACAACATGGCCATTGATAACATTGTCTCTATATggccttttatttaattcactACATCAATCTGTTTTTACCCtagaaaaaagtgtttgtgtcATGACTCCATGCTTAAGCTAAAGCTATTGGACTTTTCTTTCCTTGCAGTGCTATAGCTGCATTGTTGCGTAGTATTTTGGTTCAGGATAGATGTTTAAAAGCAGTAGTTCATGTGCAATTATACTACAGTTGAATCATGTGCTAAATATTGTACTGTCAATACTGTGGTaattttttcagtcttttttttttttttttttttttaaccctcaTGATGACCGGCAGGGCTAAGGCTTATGTTGGAAAAACATATTGTTGACATTGCTCTCACTGTGTCGTCGGACTGCTGCTGTATGTGAGCTAACCTATCGAAAGGActcaggtttttcttttcttttgagcGTTTGCTTCATACAAATCTAGTTTTCTGTCCggtaacaaaatgtgcaaacaaaagtaaaaagcGCATTTGCTTCAGTAACAAAACTTTACATTGATGTCGGAGTGAAAGTGAACACTGATACTGAGCTAAGTGTTCATAAAGTCCCCTTTGGTCTTGTAGCGATGTCACTTGGTGCTGAACAATAAATTAGCTTTGCAAGTGGGACAAGCTTGTATATCAATGGGGAGTTTGTGTTTGAGGTTAAGCATTTGTGTTGTTAGATATGTGGAGAGCCAGTTACttcctttttaatataatttcattttgcaGAAGTGCTTAGAACTAGCAATGCATCTTCCTAACTGGGAGTGTTGAATTTTTCTATTTgaattgttatacattttttatctgCTACTAACCACACTAATTCATGACAGTCACCCTGTTTTGCAGCATACATGTGGTCTTCTGGAGGCGTTTGTCTTTTGAGAATCAGAATCTTGTGTTCTAATCACCCTGCCAGGTTTCCATCGTCAATATTATAATTCTGTAGAGCCCAGTATCATTCATCATGGAGTGTTTCAAAACCTAACTGTCATTAATATAAGGCTGGAGAAACCGCCTAATCAACATGAGGGCATGTGATGAAGAAGGCAGAATGGTCAGAATGCATCCACTGCAGCCAAACAGTAGTAAATTGtgtttgtggggaaaaaagccactttattttccatgtttgtttatttattatgtgcaGCATATCCTTTCTCAAAGTTGGAGGTAGCGAAATAGCTCCTTATGTTTTTAAGTGTACTTCTCCATAGGGTACAGTgccattttgaaaaagaaaaagaaaaaaaaaaaaacttgtggaGAGGAAAACCACAGCAATGTTActgacaaaatgtttaaaaagagaattgtaatatatgttaattttatttatttaatataaacctGGATTTATCACGTGTAAAAGGTGAATTTCTTTTTACAATTCAAGTAAATGCCATGTATTTCTGCTGTTTTGCGCTTTGTGTACTTAAAACGTTAAAACTATTGTTTCAAAGATGCATAAGTTGAAGACCTATCAGCACTGAGGGTATCTTGTCATCTTTTCTTTCCCCCGTTGAAAAAAGCTGTAATAGttaatttttcttctctgtACTCAGACAGGTTAGACTCTTGTTTAATTTAGGAGtcatattttaatcaatgtgtttttttcccccatggtattgttttaaaagtattacaaGATTAAACACTTTTACAGTAGGACTTCAGGGAGCTTTACAGTTTGCTTTATCGGTTCTCAATAAAAAAgcggaaaaaaacaactactaACAAACAGTTGTGTTTCTTCGTATAATAACTTCAAAGCGAAGTCCTCTCTCTTGGTCAGTCTAATTCAGTGGATCCATCATACTGGTATTGTTTACTccatgacatttatttttttattgtgattattatcatttatatgtttgtttgattatttattcgGTAATACTAGATAACATCATATCCATACATACATGAAGAGCAGGTGGGGTTGAATGGACTGACTGGAGACTGAGGCTTACCTTGCTGGTGAATTTTGGAAAGGCAATAACACATTTGTgtcatatacatacagtgaggggaaaaaagtttttgattccctgctgattttgtacgtttgc

Function

GO:

id name namespace
GO:0006974 cellular response to DNA damage stimulus biological_process

KEGG:

id description
K10308 FBXO31; F-box protein 31

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU80111 lncRNA downstream 3307 24304484 ~ 24304935 (-) True G64028
TU80091 lncRNA downstream 73115 24233642 ~ 24235127 (-) True G64013
TU80090 lncRNA downstream 74844 24232716 ~ 24233398 (-) True G64012
TU79973 lncRNA downstream 395021 23912862 ~ 23913221 (-) True G63921
TU79897 lncRNA downstream 1029169 23278792 ~ 23279073 (-) True G63858
TU80220 lncRNA upstream 356701 24685524 ~ 24687760 (-) True G64120
TU80224 lncRNA upstream 364819 24693642 ~ 24695563 (-) False AMCG00020559
TU80226 lncRNA upstream 372310 24701133 ~ 24701336 (-) True G64126
TU80247 lncRNA upstream 425059 24753882 ~ 24756305 (-) False AMCG00020560
TU80273 lncRNA upstream 526113 24854936 ~ 24856624 (-) True G64170
AMCG00020542 mRNA downstream 65599 24236128 ~ 24242643 (-) True AMCG00020542
AMCG00020541 mRNA downstream 111282 24164670 ~ 24196960 (-) True AMCG00020541
AMCG00020539 mRNA downstream 187504 24091734 ~ 24120738 (-) True AMCG00020539
AMCG00020540 mRNA downstream 223232 24074873 ~ 24085010 (-) True AMCG00020540
AMCG00020526 mRNA downstream 239733 24062892 ~ 24068509 (-) True AMCG00020526
AMCG00020544 mRNA upstream 22658 24351481 ~ 24370043 (-) True AMCG00020544
AMCG00020545 mRNA upstream 72347 24401170 ~ 24401799 (-) True AMCG00020545
AMCG00020546 mRNA upstream 149678 24478501 ~ 24508437 (-) True AMCG00020546
AMCG00020550 mRNA upstream 197279 24526102 ~ 24531462 (-) True AMCG00020550
AMCG00020549 mRNA upstream 217113 24545936 ~ 24553994 (-) True AMCG00020549
TU79847 other downstream 1146342 23154692 ~ 23161900 (-) True G63819
TU79676 other downstream 1763553 22543842 ~ 22544689 (-) True G63679
TU79413 other downstream 2995637 21312202 ~ 21312605 (-) True G63464
TU78822 other downstream 6268282 18037042 ~ 18039960 (-) False G62961
TU78814 other downstream 6292382 18006168 ~ 18015860 (-) True G62961
TU80215 other upstream 347924 24676747 ~ 24677810 (-) False AMCG00020561
TU80345 other upstream 782287 25111110 ~ 25112551 (-) True AMCG00020581
TU80367 other upstream 792275 25121098 ~ 25139385 (-) False G64247
TU80385 other upstream 880236 25209059 ~ 25211063 (-) True G64260
TU80401 other upstream 913346 25242169 ~ 25242511 (-) True G64271

Expression Profile