RNA id: AMCG00020544


Basic Information

Item Value
RNA id AMCG00020544
length 2345
RNA type mRNA
GC content 0.58
exon number 10
gene id AMCG00020544
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 24351481 ~ 24370043 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TTCACATTGAGAGAATAGAACTTAAGGGACAGGCACACAAAAAGAGTGAGAAGGCGGCAGAGTATTCATTCGAGgttatgtGGTCAGATTCTACAGTATCAACCGTTTCAAAAGTTCCTCAAGAACTGACTGACTTTTTCGCAAAGCTCTTGCAGCTCTTTCCTGATGAAGATATTGAGAAGCTCATTCCACAGCTCACTGGCCTGGACTCCACCTTGGACCCAGACCCCAGATGCCTGACGTCACTGCCCTCCCACATACTGAAACATGACCAAGTCAAACAGTTCTTCAGCACCCTATCAGTCGCCCAGTGTGCCCAAACAACAAGTagGCCTATCTGTGGTGTTGCCAGTATACAGCCTGTatgcagcaccagcagcagctgCGCACACCAGCTATCTCCACCCTCCTTTGTTGCCCCGTTCCTCTCCCCTCCCAGTGGACCCATCCTGACACCCAGTGGCACGCTGGCAGAGAACCTGACACCGTCCCCCGCCTTACCCACTGCATCTAACCCACCTTTGCACAGCTTACAGAGCCAGCCAAGCCAAGAGCAGAATGGCATCCTGGATTGGCTGCGCAAACTACGCCTACACAAATACTACCCCGTCTTCAAGCAGCTCACCATGGAGAAGTTTTTGGCGCTGACAGAGGAGGACCTCAATAAATATGATCTTACTCAAGGAgcgaagaaaaaactaaaaacacagctgGAGCTTCAGAATCGAGAGAAGTTTGAAAAGAAGTACGTGGTATCCCAGTTTCCTGTGCCCACCAGTGGAGTGGCAAGAGTGACCCCTACCAATCATATTCACACCAAGCTGCGTGTGGAGGTGGAGCCCAGCCCTCATCCCTTCCCCAGGGACAGTAGCTCCTCCTCAGGGTACTCCAGTTCCCCGACCAGCCCCATGGCAGCTTCTTCCAGGGACGAGGCCTTCGACAGCACCGAGGACACCCACAGACGCACCGAGTCCTTGTCAGAGTGCCCTGGGAAGGAGAAGCCCTCTGTTTTAATGAATCACTTCATGGCAGCTGGTGCACCCAGACCAACAGCTCAGGTCCTGCCAGTGCAGAACGACGGCACTGCCAGTTCCCCCTATCACCTGCCCCTTCCCATGCCCGTCCTGCCAGTGATCTCCTCTAGCGTGGTGCCCAGCCGCATGCTGAGCTCCATACGGAAACCCGACAGGGGCAGCTCCAGGATGCCTCCTCCTCCCATCCTCTCCCCTCTGTGTCTCGAGGAGAGGATGAAAGCCCTGGGGCCGGGCAGCAGCATTAAAATCGAAAAACGCTTCCCCAGCCTCAGCCTGGAAATGTCTGCCCTGCAGCCCAGCTCTATGCTCCTGGACAGCAGCTCCTCTCCAGTGACGCTCACAGGCTTCGCAGTGCGCACCAAAACCGGGCAGGAGGGGACGATGAGGTCCCCCCCAGGACTGCTCATTGAGACCAGCACGGCCCCCACTGCCACCTCCAACACCATTCACCACATCTCCCACACCCCACTCAAGCTCCAggtctccccatctctctccggCGACGCTGGCACCCTGCCCATCAAGAGCGTCCCGCCAGCCGTAGTCAACCCGCGCGCCGGCCCTTACTCTACCAATGCCAAAGTTGCCTTCTCAGCCGTGAGCGGCCTACCCATGGCTGCTGTGCCAGGGACCTACTGCAGCAACACTAGCGCCCCTCCTTCCACCATCCAGACCAACGCCATCACCGCACACGCCAGCCCCTCGGCAAGCTCTAGCCCTGCCCTCTCGGCCATGGCAGAGAACAGCTGCTACAGCACAGCTGCTGGCTCAGGGCACCAGGTCTCGCAGCAGCAGCCTCAGGGGCAGTCAGGCTGTGTGTGCAGCTCATGTGGATGCAGCGGGAACTGTGGCTCCTATAGTGCTCTGCCTGCCAACTACGCCGGTTATTTCCAGCATCCCTTCTCGGGGCCGTCCGTTTTTACCTTGCCGTTTCTGCACTTCAGCCCCCTGTGCAACAATGGCTACATTGGCCCGCAGCAGTACACCAGCTCCACGGGCTTCTCCTACCCCATGGTGCCGCCGCCCCTGTACAACAACAGCCTGACTCCAGAATCCATGCTGAGCAGCCAGTCTGGCTTCGTCATGCCCCCCATGCAGAGCTTCATCAGCGGGGCGGCCGGAGTGTACCAGGCCCAGGGCATGATGGGAAACAGCTCCGGACACAAGAGGGCAGGAAATGTTTCTTGTTATAACTGTGGCATCAGCGGACACCGGGCTCAGGACTGCAAGCAGCCGCCGATGGATTCTAATCAGCAAGGTACCTTCCGGTTGAAGTACGCCCCTCCTTCGGAGAACCACGATTCTGCTGAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU80111 lncRNA downstream 46546 24304484 ~ 24304935 (-) True G64028
TU80091 lncRNA downstream 116354 24233642 ~ 24235127 (-) True G64013
TU80090 lncRNA downstream 118083 24232716 ~ 24233398 (-) True G64012
TU79973 lncRNA downstream 438260 23912862 ~ 23913221 (-) True G63921
TU79897 lncRNA downstream 1072408 23278792 ~ 23279073 (-) True G63858
TU80220 lncRNA upstream 315481 24685524 ~ 24687760 (-) True G64120
TU80224 lncRNA upstream 323599 24693642 ~ 24695563 (-) False AMCG00020559
TU80226 lncRNA upstream 331090 24701133 ~ 24701336 (-) True G64126
TU80247 lncRNA upstream 383839 24753882 ~ 24756305 (-) False AMCG00020560
TU80273 lncRNA upstream 484893 24854936 ~ 24856624 (-) True G64170
AMCG00020538 mRNA downstream 22658 24308242 ~ 24328823 (-) True AMCG00020538
AMCG00020542 mRNA downstream 108838 24236128 ~ 24242643 (-) True AMCG00020542
AMCG00020541 mRNA downstream 154521 24164670 ~ 24196960 (-) True AMCG00020541
AMCG00020539 mRNA downstream 230743 24091734 ~ 24120738 (-) True AMCG00020539
AMCG00020540 mRNA downstream 266471 24074873 ~ 24085010 (-) True AMCG00020540
AMCG00020545 mRNA upstream 31127 24401170 ~ 24401799 (-) True AMCG00020545
AMCG00020546 mRNA upstream 108458 24478501 ~ 24508437 (-) True AMCG00020546
AMCG00020550 mRNA upstream 156059 24526102 ~ 24531462 (-) True AMCG00020550
AMCG00020549 mRNA upstream 175893 24545936 ~ 24553994 (-) True AMCG00020549
AMCG00020547 mRNA upstream 187570 24557613 ~ 24576901 (-) True AMCG00020547
TU79847 other downstream 1189581 23154692 ~ 23161900 (-) True G63819
TU79676 other downstream 1806792 22543842 ~ 22544689 (-) True G63679
TU79413 other downstream 3038876 21312202 ~ 21312605 (-) True G63464
TU78822 other downstream 6311521 18037042 ~ 18039960 (-) False G62961
TU78814 other downstream 6335621 18006168 ~ 18015860 (-) True G62961
TU80215 other upstream 306704 24676747 ~ 24677810 (-) False AMCG00020561
TU80345 other upstream 741067 25111110 ~ 25112551 (-) True AMCG00020581
TU80367 other upstream 751055 25121098 ~ 25139385 (-) False G64247
TU80385 other upstream 839016 25209059 ~ 25211063 (-) True G64260
TU80401 other upstream 872126 25242169 ~ 25242511 (-) True G64271

Expression Profile