RNA id: TU80215


Basic Information

Item Value
RNA id TU80215
length 1064
RNA type TUCP
GC content 0.56
exon number 1
gene id AMCG00020561
representative False

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 24648003 ~ 24677810 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

acaatacagctaCCTGTATTTACTTACAcataatgtaatacataataTTCCTCACCTCCAGTTGGGCATATGAGCTTCATAGTCCCAGTACTCTCTGCTCTTCAGAGTGTTGACATCGGCGTACACCCGAGATTTGCTACCGGCCGCCGGGCCGGGCATGGCGGGCGAGGGAGCTCGGTCTAGGAGGGGCTCGGTTACAGCaggtgtgtttgagagagacgCTGGGAACGCACAACAACGGATTGCAATCGGAGTCGGGACGGTGTCGTCCAAATACAGCGAGCTGTTTTCGGGTACGTTATCCCGGGGGAGGTGGGCAACGTGTCCTGAAAGCTTACGGCAAGGAGGGATCACCGCCCGGAACCTGAGAGCTAAGGCGACCGTGGATCCAAGCTTCAAGACCCGGGCTGGAGAAGGGAGGAGAGGGATCGCCAGCGTAAGTGAAGCGGTGAGGGCAGGAAAGAAGTAGCTGTGTAGACCTCTGGAGGCGGTGATGGTACACTGGGATTTGAGTTAGAGATTAAAGGGGGAAAAGGACAGGGGGCTGTGAAACTACAGATTGCAGGCTAacccaccccccatccccctctgGGCCTCGAATCTCTGATCCGGCTAAGGGAAATCCCAGTGAGATTCCCCCGGGGCAGGCCCTGGAAGAGGCGAAACGGATCTCCGGGCGTATGGGATGGCGCTGGTGCTGTGGATGTTGACGAAAAACGGGTTTACAATCCAGGGATATAGACAGGATATATGAAACCTGGAGCCGACGGGGGAGAGATCGGTGTTCTCAGAGCCCTGTTTTGATCGGTAGATTGATGGATGAATATCCCGCCGCCGTGAAGCGCTATTTTGCGCCCCCCCGGGCAGGACTTAAAGCCTGCAAGCGCAAAAAAGCTACAAGAGGAAACCGGGGAAAATACTCTGGAGGTCGGATTCGGGGATCTCTTTGGGAACCCCCCCCGGTCCGTACTGCAGGGAACCGGATTGCGGCAGAAACACCCGGAAACGATCGGGAAGAGTGGCGACGGATGGAACGGCGTAGCTTCTCGGGCCGTAAAGAACGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU80111 lncRNA downstream 371812 24304484 ~ 24304935 (-) True G64028
TU80091 lncRNA downstream 441620 24233642 ~ 24235127 (-) True G64013
TU80090 lncRNA downstream 443349 24232716 ~ 24233398 (-) True G64012
TU79973 lncRNA downstream 763526 23912862 ~ 23913221 (-) True G63921
TU79897 lncRNA downstream 1397674 23278792 ~ 23279073 (-) True G63858
TU80220 lncRNA upstream 7714 24685524 ~ 24687760 (-) True G64120
TU80224 lncRNA upstream 15832 24693642 ~ 24695563 (-) False AMCG00020559
TU80226 lncRNA upstream 23323 24701133 ~ 24701336 (-) True G64126
TU80247 lncRNA upstream 76072 24753882 ~ 24756305 (-) False AMCG00020560
TU80273 lncRNA upstream 177126 24854936 ~ 24856624 (-) True G64170
AMCG00020554 mRNA downstream 40396 24631379 ~ 24636351 (-) True AMCG00020554
AMCG00020555 mRNA downstream 66674 24596511 ~ 24610073 (-) True AMCG00020555
AMCG00020548 mRNA downstream 90228 24578382 ~ 24586519 (-) True AMCG00020548
AMCG00020547 mRNA downstream 99846 24557613 ~ 24576901 (-) True AMCG00020547
AMCG00020549 mRNA downstream 122753 24545936 ~ 24553994 (-) True AMCG00020549
AMCG00020559 mRNA upstream 14083 24691893 ~ 24698947 (-) True AMCG00020559
AMCG00020560 mRNA upstream 78316 24756126 ~ 24776409 (-) True AMCG00020560
AMCG00020565 mRNA upstream 114132 24791942 ~ 24800783 (-) True AMCG00020565
AMCG00020564 mRNA upstream 136956 24814766 ~ 24821061 (-) True AMCG00020564
AMCG00020566 mRNA upstream 165200 24843010 ~ 24846428 (-) True AMCG00020566
TU79847 other downstream 1514847 23154692 ~ 23161900 (-) True G63819
TU79676 other downstream 2132058 22543842 ~ 22544689 (-) True G63679
TU79413 other downstream 3364142 21312202 ~ 21312605 (-) True G63464
TU78822 other downstream 6636787 18037042 ~ 18039960 (-) False G62961
TU78814 other downstream 6660887 18006168 ~ 18015860 (-) True G62961
TU80345 other upstream 433300 25111110 ~ 25112551 (-) True AMCG00020581
TU80367 other upstream 443288 25121098 ~ 25139385 (-) False G64247
TU80385 other upstream 531249 25209059 ~ 25211063 (-) True G64260
TU80401 other upstream 564359 25242169 ~ 25242511 (-) True G64271
TU80414 other upstream 596731 25274541 ~ 25276417 (-) False AMCG00020589

Expression Profile