RNA id: AMCG00020565


Basic Information

Item Value
RNA id AMCG00020565
length 1260
RNA type mRNA
GC content 0.60
exon number 5
gene id AMCG00020565
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 24791942 ~ 24800783 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AGCAAAGAGAGCAACAGATGAAGCTTAAGGCTAACAAGTCCACTGCTGCTGGAAATGAAAGGGGAGCAGTCGTTTATACTTTGTACATACAAGTGTGCTTGAAACAGTTGTCCCTGCCAGTCTACCAGAGGCTGCACCATGTTGCGGATTGGCCTGCGGAGATCCCTGCTGAGTGTGTGCGTGCTGGCAGTGGTCATGATTGCTTTCGGTCTAATGCAGGTCAACCTGCTCGACAGAAAGCCTCTCAAACCACTGCTACAAAGAAGAGATCCCCCAGTCTCCATTCAAGAGCTCCTACACCCCAGGCAGCCAAGGAAACCAGACCCCCTGAGGGTAGACCCTGGTAGAGATGGCCAGGCCAgGGGGCACAAAGGCTCAGAAGATGCCCAGAGGAAGGGGTCAGGAGAAGCACAGGGGTGCCTGACCTCCGGAAGGCCATCCCAAGAGAAACTGGGAAGGCTGCTTGGCTCAGGCAGAAAGCCAGACTGGCTGAGTCCTCGAGATCAGGAGACAATTATGTGGTTGAGAGAGGGCTCTGTCCGCAAGGTGGATCGCCTGTACCCCCGGAGAAAGATGGCTAGGGTTGTGCTGGAGCTGGACACCTCTCAGTTGGTGGAGGACAACAGGGATTACTGCGGCCAAGGTAGCTGTGCCTTGGTGAGGGAGACGGGAAACCTGGACGCCATGCTGAGGTTCCACCTGGACCGGCTGCTGGGACTGGAAGTGGTTCCTCCTACCACCGCTCGCGTGCTCTCCACCTGGCTGCTGCCTTTCCACTACACAGACGGGCGACCCCACGCACTGAGCTGGTCGAACCCCTTCCCAGGCTGGGACTGTGAGGGGGGACCGCCCTGTGAGGGAGGAGAAGGCGGCAGTGCCCAGCGCCTCCTGGATTATCTGTTGCAGGGACCAGATGGAGGAGTAATGACTTCTGACAGGCAGGATGAACTTGTCACGGGGATGACTGAACAATTTGAGCACGGCCGAGCTCGCATTGACGTCAACCAGCCAGCCAGCTCTGTGAGCGGATCTGAGAGCAGCAGACAACACTGCAGAGGAGCGGAGCGCACCGCACCGccccgcaccgcaccgcaccgcaccgcaccgccccgcaccgcaccgcacagCACCCCCAGCATCCCGCACACACAGCACCAGGGCATGCCCGGCACAGCGGCTGCACAGACACACGCTTCCCCGGCTCTGAGCTGcgcacacacagcactgacagcagCTCCCTCTCCTCCCGACGACAAGCAA

Function

GO: NA

KEGG:

id description
ko00260 Glycine, serine and threonine metabolism

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU80247 lncRNA downstream 35637 24753882 ~ 24756305 (-) False AMCG00020560
TU80226 lncRNA downstream 90606 24701133 ~ 24701336 (-) True G64126
TU80224 lncRNA downstream 96379 24693642 ~ 24695563 (-) False AMCG00020559
TU80220 lncRNA downstream 104182 24685524 ~ 24687760 (-) True G64120
TU80111 lncRNA downstream 487007 24304484 ~ 24304935 (-) True G64028
TU80273 lncRNA upstream 54153 24854936 ~ 24856624 (-) True G64170
TU80292 lncRNA upstream 144515 24945298 ~ 24946210 (-) True G64186
TU80324 lncRNA upstream 200564 25001347 ~ 25001657 (-) True G64213
TU80329 lncRNA upstream 251421 25052204 ~ 25052452 (-) True G64218
TU80332 lncRNA upstream 263353 25064136 ~ 25064342 (-) True G64221
AMCG00020560 mRNA downstream 15533 24756126 ~ 24776409 (-) True AMCG00020560
AMCG00020559 mRNA downstream 92995 24691893 ~ 24698947 (-) True AMCG00020559
AMCG00020561 mRNA downstream 114947 24648003 ~ 24676995 (-) True AMCG00020561
AMCG00020554 mRNA downstream 155591 24631379 ~ 24636351 (-) True AMCG00020554
AMCG00020555 mRNA downstream 181869 24596511 ~ 24610073 (-) True AMCG00020555
AMCG00020564 mRNA upstream 13983 24814766 ~ 24821061 (-) True AMCG00020564
AMCG00020566 mRNA upstream 42227 24843010 ~ 24846428 (-) True AMCG00020566
AMCG00020575 mRNA upstream 146438 24947221 ~ 24950873 (-) True AMCG00020575
AMCG00020574 mRNA upstream 171966 24972749 ~ 25001128 (-) True AMCG00020574
AMCG00020581 mRNA upstream 310328 25111111 ~ 25112487 (-) False AMCG00020581
TU80215 other downstream 114132 24676747 ~ 24677810 (-) False AMCG00020561
TU79847 other downstream 1630042 23154692 ~ 23161900 (-) True G63819
TU79676 other downstream 2247253 22543842 ~ 22544689 (-) True G63679
TU79413 other downstream 3479337 21312202 ~ 21312605 (-) True G63464
TU78822 other downstream 6751982 18037042 ~ 18039960 (-) False G62961
TU80345 other upstream 310327 25111110 ~ 25112551 (-) True AMCG00020581
TU80367 other upstream 320315 25121098 ~ 25139385 (-) False G64247
TU80385 other upstream 408276 25209059 ~ 25211063 (-) True G64260
TU80401 other upstream 441386 25242169 ~ 25242511 (-) True G64271
TU80414 other upstream 473758 25274541 ~ 25276417 (-) False AMCG00020589

Expression Profile