RNA id: AMCG00020574


Basic Information

Item Value
RNA id AMCG00020574
length 1672
RNA type mRNA
GC content 0.47
exon number 10
gene id AMCG00020574
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 24972749 ~ 25001128 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ACCTTGCAGTCGTTCAGCTTCAgtgaactacatttcccagaaagCCAGTGGTGTACACTGGGTCTCCATAGCTACCACACGCTGGTTCCCGTGTCCAGGAAGGAGAAGGTCCTGGAGGAATACAGGCAGGGCTCTCTGTCTCATACACATAAAGATCCTGCCCCTCTTCAACTAGATGCCACTACAGACCCACAAGAGCTGAGACGAGGCCGGTTCTCTGAGGTTTTCAGTGATACAGAGAGCAGTGCAGGGGAAGACGAGGAGTCGGGTGAAGAGGAAGACTGGGAGAAGTTCGACAGCAGAGTAAATGAGTTCCTGCTGGCGGCAAAAGATCGTCGATCTCAGAGGCTCAGAACAGTCGAGAAGAAGGAGATTCCCCCTCGTGCTGTGGGGATCGAGTCCTTAATTGTGGCTGCAGCCACGTATGAAGTGAAACGTCTGAAGTGTGGCGAGAGGGTGCTGCAGCTGGCCCTGCTATCCACAAGGAAGAGATACAAACAATGTGGAGCTGGCCGATACCTCCTAGAGCTGCTGAAAGACGCTTCTGTCTGTGGCTCTTACCATGCCCTGCTGACACATGCGGACTCAGACGCTGTCCCTTTCTTCTCCAAGTGCGGGTTTACAGATGACATCCTTCTCAACAATAAATTCAGGTACCAAAAAGCACAGGGACAGGCAGTTTGCATGAGCAGGCTACTCCACGAGGTTCAAATCCTGAGGAAAGAGCTTGTCTCACAGAAGGAGCAGATTGACAGCCTGAGCcaagagctggagagagagaggcagcgcAGGCACATGACAGAGCAGCGCTTTCTGGAGTACAGGCTGGAGAAGACAAGGCAGATCCTGGATATGAGCAGTCTCAGCTCAGATGAGCAGGACCATGAGAGCTCTGCAGACGTGTGCCCATGGATGGGAGAGGAGAATGAGAATAGCACCAAACAAGGTCCGTCAACAAAACACAGGGAAGTGACAGAGATTGCACAGTAAGACAAGGTGACCCTCAGCCTCGCTCCCAGGGATCAATCTGAATCATTCTGTCCTTCGAGGCATCACCCAGGTCCTAATGGGAAGTGAAGCAGTCTGCCATGCAGCTTGCTTAGCACTGATCACAGGCTTTGAACATTGCTCATGGTATACCTGTGGGGCCGTGACTTCAATCACTGTTTGTAATCACAGTGCTTGAGGGACTCTTTAAAATCTGCCCTAGAGATTGAGTTAACCTCGGCTAGAGACCACTACTTTCCTGTTTTACTGCCTcagaatacaatgtattttaaagaactgCTTTTAGAAAAGgttgtgatgttgtttttttaatctctaaaataaattaagatctGTCGAACTGTGAAATGATAGATGCACTAATTTATGTTTACTTTAGTTCTTTGAGTGTGGTGTTCATGTCTGACAGTGAGCAGCTTTCATTGGTTGTGAGGTTTAAATCATTTCCCAACGATTGAGAAATTGTTCtatatatttgaacaaaatctaaaaatctTGAACCCATTGTattcaataacaacaacaaaaatcataaCAATGTTCATGAACACAAGGAGACGTCAGGTATTTagtttatgaaatgtattaacagTGTTATGGATTTCAGCACACTATTTgcaacatacagtgcatccagaaagtattcacagcgcttcactttttc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU80292 lncRNA downstream 26539 24945298 ~ 24946210 (-) True G64186
TU80273 lncRNA downstream 116125 24854936 ~ 24856624 (-) True G64170
TU80247 lncRNA downstream 216444 24753882 ~ 24756305 (-) False AMCG00020560
TU80226 lncRNA downstream 271413 24701133 ~ 24701336 (-) True G64126
TU80224 lncRNA downstream 277186 24693642 ~ 24695563 (-) False AMCG00020559
TU80324 lncRNA upstream 219 25001347 ~ 25001657 (-) True G64213
TU80329 lncRNA upstream 51076 25052204 ~ 25052452 (-) True G64218
TU80332 lncRNA upstream 63008 25064136 ~ 25064342 (-) True G64221
TU80354 lncRNA upstream 92903 25094031 ~ 25094326 (-) True G64235
TU80357 lncRNA upstream 98909 25100037 ~ 25101087 (-) True G64238
AMCG00020575 mRNA downstream 21876 24947221 ~ 24950873 (-) True AMCG00020575
AMCG00020566 mRNA downstream 126321 24843010 ~ 24846428 (-) True AMCG00020566
AMCG00020564 mRNA downstream 151688 24814766 ~ 24821061 (-) True AMCG00020564
AMCG00020565 mRNA downstream 171966 24791942 ~ 24800783 (-) True AMCG00020565
AMCG00020560 mRNA downstream 196340 24756126 ~ 24776409 (-) True AMCG00020560
AMCG00020581 mRNA upstream 109983 25111111 ~ 25112487 (-) False AMCG00020581
AMCG00020589 mRNA upstream 271465 25272593 ~ 25284209 (-) True AMCG00020589
AMCG00020590 mRNA upstream 288374 25289502 ~ 25302972 (-) True AMCG00020590
AMCG00020592 mRNA upstream 324665 25325793 ~ 25329845 (-) True AMCG00020592
AMCG00020591 mRNA upstream 329945 25331073 ~ 25348318 (-) True AMCG00020591
TU80215 other downstream 294939 24676747 ~ 24677810 (-) False AMCG00020561
TU79847 other downstream 1810849 23154692 ~ 23161900 (-) True G63819
TU79676 other downstream 2428060 22543842 ~ 22544689 (-) True G63679
TU79413 other downstream 3660144 21312202 ~ 21312605 (-) True G63464
TU78822 other downstream 6932789 18037042 ~ 18039960 (-) False G62961
TU80345 other upstream 109982 25111110 ~ 25112551 (-) True AMCG00020581
TU80367 other upstream 119970 25121098 ~ 25139385 (-) False G64247
TU80385 other upstream 207931 25209059 ~ 25211063 (-) True G64260
TU80401 other upstream 241041 25242169 ~ 25242511 (-) True G64271
TU80414 other upstream 273413 25274541 ~ 25276417 (-) False AMCG00020589

Expression Profile