RNA id: TU80346


Basic Information

Item Value
RNA id TU80346
length 605
lncRNA type sense_over
GC content 0.35
exon number 4
gene id AMCG00020581
representative False

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 25111110 ~ 25119596 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TCAGCAAGAGAACCAATTGCTGGCAATCCATGTTGCTCAGATTTCATCAAACACAGAATCCCTAGGGATGTGATTGTATCCTACTGGAAGaccagcagcagctgcagcaaatCTGCAGTCGTCTTTGTGACATCCCAAAAACAGATGTGTGTGGACCCCAGCCTGCACTGGGTAAAACATCATATGAAATATGTGGACCAGAAGATGAAAACATCCCCCACAGCCAGGCCCTCCACTGCCACGAAACAGTGATGTTGAACTTGAAATTCAATGTATCTGCAGTCTGTTTCCAAATCAGGTTCTGATTCTTTCTTAACACAGTAGCATTAAGAGCAATTTAGGCCAGAAAACTCAATCCATTGCCGTGTATcaattgtacatattttatttattttacttttattttatttgcatggatttggttttgttcaggtgcatattttcaaaaagaatatttaattaagtgattcttcaaaacatttatagATAGCTAAAATAAGACAAATTGTATAATTCTCCAAATTGTATAGTTtttcatatgtttatttttataattggttatccttgtttttcattaggaataatgtattgtatttgtattttct

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU80357 lncRNA downstream 10023 25100037 ~ 25101087 (-) True G64238
TU80354 lncRNA downstream 16784 25094031 ~ 25094326 (-) True G64235
TU80332 lncRNA downstream 46768 25064136 ~ 25064342 (-) True G64221
TU80329 lncRNA downstream 58658 25052204 ~ 25052452 (-) True G64218
TU80324 lncRNA downstream 109453 25001347 ~ 25001657 (-) True G64213
TU80368 lncRNA upstream 16836 25136432 ~ 25139385 (-) True G64247
TU80380 lncRNA upstream 83528 25203124 ~ 25216693 (-) True G64258
TU80404 lncRNA upstream 142330 25261926 ~ 25264235 (-) True G64274
TU80488 lncRNA upstream 341831 25461427 ~ 25461642 (-) True G64340
TU80489 lncRNA upstream 343944 25463540 ~ 25464116 (-) True G64341
AMCG00020574 mRNA downstream 109982 24972749 ~ 25001128 (-) True AMCG00020574
AMCG00020575 mRNA downstream 160237 24947221 ~ 24950873 (-) True AMCG00020575
AMCG00020566 mRNA downstream 264682 24843010 ~ 24846428 (-) True AMCG00020566
AMCG00020564 mRNA downstream 290049 24814766 ~ 24821061 (-) True AMCG00020564
AMCG00020565 mRNA downstream 310327 24791942 ~ 24800783 (-) True AMCG00020565
AMCG00020589 mRNA upstream 152997 25272593 ~ 25284209 (-) True AMCG00020589
AMCG00020590 mRNA upstream 169906 25289502 ~ 25302972 (-) True AMCG00020590
AMCG00020592 mRNA upstream 206197 25325793 ~ 25329845 (-) True AMCG00020592
AMCG00020591 mRNA upstream 211477 25331073 ~ 25348318 (-) True AMCG00020591
AMCG00020594 mRNA upstream 353659 25473255 ~ 25479762 (-) True AMCG00020594
TU80215 other downstream 433300 24676747 ~ 24677810 (-) False AMCG00020561
TU79847 other downstream 1949210 23154692 ~ 23161900 (-) True G63819
TU79676 other downstream 2566421 22543842 ~ 22544689 (-) True G63679
TU79413 other downstream 3798505 21312202 ~ 21312605 (-) True G63464
TU78822 other downstream 7071150 18037042 ~ 18039960 (-) False G62961
TU80367 other upstream 1502 25121098 ~ 25139385 (-) False G64247
TU80385 other upstream 89463 25209059 ~ 25211063 (-) True G64260
TU80401 other upstream 122573 25242169 ~ 25242511 (-) True G64271
TU80414 other upstream 154945 25274541 ~ 25276417 (-) False AMCG00020589
TU80419 other upstream 179206 25298802 ~ 25302981 (-) False AMCG00020590

Expression Profile