RNA id: AMCG00020589


Basic Information

Item Value
RNA id AMCG00020589
length 4776
RNA type mRNA
GC content 0.52
exon number 9
gene id AMCG00020589
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 25272593 ~ 25284209 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGACTTCAGGCTTGGTATGTCCCTGCTGCTcagccccccagccccccagccccccgaGGAGACTTTGCCCCGGGGCAGCGCGTGGAGGCTCTCGAGCCCCGGTCCCGCCTCCCGCGCGCCTCCCGCACAGCCCGCGCCAGGCTCGAGCTCAGACTGCGCGTTAACCGTCTCCTCGCAGGACAGGGCAGCAATGGGGCACACTCTGAGCTGCCATCGCTCCTCCCGCAAGCCCACCCTCCGCCCACTCAAGGTGAAGCATCAGCTGAGCGCCGCCTGCAACTTCGCAGACCTACAGTCTCCCACTGAGCGTCTGGACCTCAACGTGGCCTCCGAGGAGGAGCTGATGACCCTGCAGGGGGTGGACCGCATTCTGGCCCGGGATATCGTGGCATATCGGGCCCGCATCGGTGGCTTCCGCAAAGTGGAAGACGTGGCACTGGTGACGGGGGTGGGGGCAGCCAGGATGGCGCGGATGAAGTCGGAGGTGTGTGTGACCGAGCCGGGGTCGGTGCCCAACCTCTTCAGCCTGGACCTGCTGTCCACCACCCGTGTGGACGTCAACACCACCTCCACCAGTCACCTGCAGAGTATGACTATGGTGACACCAGAGCTGGCCCAGGCTGTAGTGCTCCACCGGACAGTGCATGGACCCTTTCACAGATCTGAGGAGCTGGGCCATGTCAAGGGCCTGGAGCCCCACCTGCTCACACGTCTCCTCCCCCAGGTCAACACCAGCCGCCCGCGGCCGGCCTCCACCTACACAGACCTGCGCAACGACGGGCTGGCCCGGCCCTGCGCTGCCTTCTCCTTCCATAGCCTCCAGGAGGTGGACTTGGGCCTCCCTCCACGGTGGGCCACTCCCATGCGGCCGCTCTCCCAGCCTTTCTCCGGGGTCTTCAATGAGAGACCTGTGCTTCGGGTGGCCACCTGGAACCTGAAAGAGTTCAGCACAGAGAAGGCCCAGAACCCCGGGGTGAGGGAGGTGGTGTGCCTCACGCTGCTGGAGAATGGCTTTTCCCAGCCAGTGGTGTATCAGTACTTCAGTATAGTTTGTAGCATTCATGGCTATGGTTTGCCAGGTAAATTGGTGTGTCTGGAGCTGGAGAGCCCTAGCACAGCAGCGGTGCGCGAGTGGCCAGGAGACAGAGGGACGTGGCGCTATGTCCTAATGGACCCGCCGCAGGGACAGGAAGGACAGGAAGTGGAGAGGGTGGCCTTTCTGTGGGACTGCAGCTCTGGGCTGGAGCTGGTGCGGGCTGTTACTGTGGAGACGCGTAGTGAGGGGAACGCAAGTCCTCAAAGCCAACCTCTACTGGGCAGCTTTAAGATGGAAGCTCTGGAGTTCAGTGTGTTCAACTTGCACCTCAGACTTGACGCTCCAGTGAGGAGAGGACAGCCCCCCTCCAACCCACAACCTCTGGCCACACTGACGCCTTTCCTTAAAGAGCTGTGTGAGAAGAAGCTTCTAGCCCTTGGTCACATGGGGGCCGGGCCAGAGGCAGGGGGGCTGGCGGAGCTGCGTGACCAAGCCCTGGAGCCCCTAGTCCTCTCCGACTGCCCCACTGAGCTGCCCACACGCGGGACTGAGAGGAAGGGCTGCCTGCAGAACATCTGGGCCAGCCACATGGCCCGGGACACCTACACAGGGCGCTGGGGGGTGATCCAAACTGGACTGTCCAGTCCTTGGATTCCTGATGGATGGTCCTGGGGGGGCAGCGTGTCCAATCATTGCCCGGTGTGGGTGGAGCTGTACATGAAATAGCCAGTTAACATCACAAGTCCTGACGCAGGCAACCTGACAGCTGGGTTGCAGAAAGTTGGTTGAAACCTACAAAAAGGATGTCTTTCCCTAGGAAAGGCCCTTGATTTTGTTCTACTATAGACAACTTTGAGGCTGAAGATATGTCTTCTGTACTGTCCTGGTTTAAGGGACTTGCATGACAATTTATAATGAAGCAACATACCTCCAGCTGCCATGTGGCACATTGCTACTGCATGAAGCAGAGATGCATTCTTTTCTAAGGCTGCTAAAtggatataaaaacatttagccacatatacacaattaaaGAAACTGACTGACTGTTTGAAATAAGACAACATTGACAGTCATGCAAGAAAACCATATGGAATTTCTATCCACAGTTCTGTTCACATTGACTTTGAGAGGAATCTTCAGTGTTTCCTCAGGATCAAACCTGTTGCCACTTTAAAGAGGGACCCTCCCACTTCAGAAACATGTAATAAGTGAGCAAAGATGTGCAAACAGACAGTTCCATTCTACTTCAGAAAACCATCAAACATTACTTTCCTTCATAGGATCTAGGAAGAAGACGTTTCCAGCATCAGATCATAGACACAAATACATATGGCTACCAGGGAGTCTGGTCTACTTGGAATGCAAAATATGCTTGAATTATCTGAGCTCTGGCATGTCTTGTGGTTAGACAGTGAAGTGGTTTTATGCATTATTTCTGAGGGTGatatctattttctttttttgtttctttaaaaatgtcctgCATTGTCTGTGTGAAGATTTTAGTCTCCAGTCAGAGAAACGCTTCCTTAAATAGTTCCCCACAGTGATTGTCCTCTCTCCGCTGACTGGCTCAGTCCGTGCACATGTTTGCAGTGCGCTTTCAGGCACACTTGACTGTGGGCAGGCAGAAAGACATGCTGGGAGGAGGGACCAGTATGTTGGTGAAAACGGGCCGGTACCCTGGCGGCAGAGGTGGGGCGCTCTGCTCCAGCATATCCAGGACTGTCCCGCGCACTTCCCTCGGGACATCTCCCCTAATGTCCATCAACACAGAGATGTGCTCCTCACTGTGGGAtagaggagagacagacacagccAACATAAACACGTCCTTTAAGTCTCTGGGGGAATAAACTGTGTGACAGAATTTTTGGGGATAATTTCTCTTCAgacaagtacatttttaaaagtattaagaTAATTCCCAGATAATGTGGACAATTAGATTGGATGTGAAAACAACATTTCTTTGCCAAACCCTAGaacaaaattattttactttttatgttttattgaatttcatttcagatttatatgtgtgtatatatatatattacaacatAATCTGAACTTTAACTCAGGTTCCCATATGGTTCAACCAGTCTGCATGTTGAGTTTGGGCCTTGAAGTCCAGATATTGTGGGTAGAGGTTTAACTGTCATGAGAACAACTGCCTGAGAACTTGTAACGAGTGACATGGAAACGTTTGAGTGCCAGGATTGGCTGGGTTTGCACTGGGCCAAAGTTTCCTGCAGGACGGCTGCAAAACTGGCTCCCTGTGGCTGACCTAGACCTGCCAGCCTGCAGTGCATCTGTCACTGGCGTTCTGTTCAATGCTACCTTCTGTTCTAGGGCTAAATGTCTGTGGACTTGCCATCTAGAAAAAGCAGGTAGACGAAAAGGACACATTTCAGGGTACATGTATGTTGTCTTCAGTTATCCTCTGCTGCTATGagtgtttcagtattttattaataatttgtgcGTGAAAGGCAAAGGCAAAATTGGTGATTTAAAATAGTTGGGAGCAGGAGTCTTAAGTATTTTAGTGTAAgtgatttatgaaaataaaacctcatGGGCTCCTGTGGAACTGGAGAAAGATGGGAGGGATTACCTGATGTCGGGGTATTTGGCCACTAGTCCAGATACTTCTAGGGTCAGCATGGAGGGGTCCTTAAGGTGGATAATCTCGGCTAGTGCAGGTAGCAGCGCTGTCAGCGTCTCGGTGCCTGGCCTCGCCTGGGGGCTGCTGCTCCTTTGCTCGTCATCCTGCGCACAGACACAGGTGCTTTTCATTGAcacacgctctctctccctgtgggCATGTGTGTCGCAGTGCAGAACCGGACATGTGTCTGTAGCCGTGATATCAATAGTGACCGTGCTGTTCTGTGCGGTGCGGTGTGGTGTAGTGTCGTTACACTGACACTGTGCAATACTGTCATTGTCTGTCTCAGCCACATATGGATTTCAAATCTTCCACTATGTATGCTGTTGTCTCTTTTTACCGTTGTCTGGAAGAGCTCCTGCAGCTGCAGGGCGTCCTGCGCCATCCTGTTGGCCAGCTTGCCACGCTCCTCAGCGCTGCGGCACACCATCCGTTTCTGCATGAGGGCTCGCACGTACTCCACCACCAGGACCCACTGACTCTCCACTctcagcagctgcaggagggggagaggggacaGAGGAGCTGCTGAAATGGAAAAGTACGCCCTAGCCTTGTTTGGTCTCTGTcttgcacacacgcacacacacacacaggcactaaCAAGGCCTCCATGGCTCAGAGGACAGGAGTGCTGTGCCGTGTCTCACCTCTTGGCAGGGTTCTCGGACGTGGCTGTACAGATCACACTGCTGCTCCACGGCTCCACACAGCATGTCTAAGGGCTTGCCGTCCTCCAGCCAGGAGCGACAGAGAACCAGCAGGAACTGGGGCtgcaaagacacaaacacacacacacacaatggaaacTCCTTTCTTCATCACAATGATAGTTCaattacaaagaaaactaaAGTTAGACTACTACTACATACTACTGTTAATGTCCATGTGCTGCAGCTGCAGTGCCTCATGGTGCGAGTCGGTTGTATATTAAGCTGTAAGGACTGCAGTGTCGCTGTCACTGTGAAATCAGGCTGTAGTGCCCCTGTCTCTATGGGCTGGGTGTGTGGAGATCTTGTAATAAACCTCATACAGGTGTTTTGCATCCTGTATACAAA

Function

GO: NA

KEGG:

id description
ko04614 Renin-angiotensin system
ko04976 Bile secretion
ko04974 Protein digestion and absorption
ko04975 Fat digestion and absorption

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU80404 lncRNA downstream 8358 25261926 ~ 25264235 (-) True G64274
TU80380 lncRNA downstream 55900 25203124 ~ 25216693 (-) True G64258
TU80368 lncRNA downstream 133208 25136432 ~ 25139385 (-) True G64247
TU80346 lncRNA downstream 152997 25111110 ~ 25119596 (-) False AMCG00020581
TU80357 lncRNA downstream 171506 25100037 ~ 25101087 (-) True G64238
TU80488 lncRNA upstream 177218 25461427 ~ 25461642 (-) True G64340
TU80489 lncRNA upstream 179331 25463540 ~ 25464116 (-) True G64341
TU80490 lncRNA upstream 180668 25464877 ~ 25465350 (-) True G64342
TU80578 lncRNA upstream 356361 25640570 ~ 25643373 (-) True G64412
TU80594 lncRNA upstream 407199 25691408 ~ 25779211 (-) True G64418
AMCG00020581 mRNA downstream 160106 25111111 ~ 25112487 (-) False AMCG00020581
AMCG00020574 mRNA downstream 271465 24972749 ~ 25001128 (-) True AMCG00020574
AMCG00020575 mRNA downstream 321720 24947221 ~ 24950873 (-) True AMCG00020575
AMCG00020566 mRNA downstream 426165 24843010 ~ 24846428 (-) True AMCG00020566
AMCG00020564 mRNA downstream 451532 24814766 ~ 24821061 (-) True AMCG00020564
AMCG00020590 mRNA upstream 5293 25289502 ~ 25302972 (-) True AMCG00020590
AMCG00020592 mRNA upstream 41584 25325793 ~ 25329845 (-) True AMCG00020592
AMCG00020591 mRNA upstream 46864 25331073 ~ 25348318 (-) True AMCG00020591
AMCG00020594 mRNA upstream 189046 25473255 ~ 25479762 (-) True AMCG00020594
AMCG00020597 mRNA upstream 267381 25551590 ~ 25552969 (-) True AMCG00020597
TU80401 other downstream 30082 25242169 ~ 25242511 (-) True G64271
TU80385 other downstream 61530 25209059 ~ 25211063 (-) True G64260
TU80367 other downstream 133208 25121098 ~ 25139385 (-) False G64247
TU80345 other downstream 160042 25111110 ~ 25112551 (-) True AMCG00020581
TU80215 other downstream 594783 24676747 ~ 24677810 (-) False AMCG00020561
TU80419 other upstream 14593 25298802 ~ 25302981 (-) False AMCG00020590
TU80433 other upstream 45875 25330084 ~ 25330570 (-) True G64298
TU80656 other upstream 614219 25898428 ~ 25918630 (-) False G64470
TU80657 other upstream 614219 25898428 ~ 25905611 (-) True G64470
TU80934 other upstream 1961805 27246014 ~ 27249676 (-) True AMCG00020639

Expression Profile