RNA id: TU80414


Basic Information

Item Value
RNA id TU80414
length 1425
RNA type TUCP
GC content 0.48
exon number 2
gene id AMCG00020589
representative False

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 25272593 ~ 25284209 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CAAACCCATTTAACTTCAAATGGTCAACATGTCGCTTGTTTCAGAGCTGTGTGAGAAGAAGCTTCTAGCCCTTGGTCACATGGGGGCCGGGCCAGAGGCAGGGGGGCTGGCGGAGCTGCGTGACCAAGCCCTGGAGCCCCTAGTCCTCTCCGACTGCCCCACTGAGCTGCCCACACGCGGGACTGAGAGGAAGGGCTGCCTGCAGAACATCTGGGCCAGCCACATGGCCCGGGACACCTACACAGGGCGCTGGGGGGTGATCCAAACTGGACTGTCCAGTCCTTGGATTCCTGATGGATGGTCCTGGGGGGGCAGCGTGTCCAATCATTGCCCGGTGTGGGTGGAGCTGTACATGAAATAGCCAGTTAACATCACAAGTCCTGACGCAGGCAACCTGACAGCTGGGTTGCAGAAAGTTGGTTGAAACCTACAAAAAGGATGTCTTTCCCTAGGAAAGGCCCTTGATTTTGTTCTACTATAGACAACTTTGAGGCTGAAGATATGTCTTCTGTACTGTCCTGGTTTAAGGGACTTGCATGACAATTTATAATGAAGCAACATACCTCCAGCTGCCATGTGGCACATTGCTACTGCATGAAGCAGAGATGCATTCTTTTCTAAGGCTGCTAAAtggatataaaaacatttagccacatatacacaattaaaGAAACTGACTGACTGTTTGAAATAAGACAACATTGACAGTCATGCAAGAAAACCATATGGAATTTCTATCCACAGTTCTGTTCACATTGACTTTGAGAGGAATCTTCAGTGTTTCCTCAGGATCAAACCTGTTGCCACTTTAAAGAGGGACCCTCCCACTTCAGAAACATGTAATAAGTGAGCAAAGATGTGCAAACAGACAGTTCCATTCTACTTCAGAAAACCATCAAACATTACTTTCCTTCATAGGATCTAGGAAGAAGACGTTTCCAGCATCAGATCATAGACACAAATACATATGGCTACCAGGGAGTCTGGTCTACTTGGAATGCAAAATATGCTTGAATTATCTGAGCTCTGGCATGTCTTGTGGTTAGACAGTGAAGTGGTTTTATGCATTATTTCTGAGGGTGatatctattttctttttttgtttctttaaaaatgtcctgCATTGTCTGTGTGAAGATTTTAGTCTCCAGTCAGAGAAACGCTTCCTTAAATAGTTCCCCACAGTGATTGTCCTCTCTCCGCTGACTGGCTCAGTCCGTGCACATGTTTGCAGTGCGCTTTCAGGCACACTTGACTGTGGGCAGGCAGAAAGACATGCTGGGAGGAGGGACCAGTATGTTGGTGAAAACGGGCCGGTACCCTGGCGGCAGAGGTGGGGCGCTCTGCTCCAGCATATCCAGGACTGTCCCGCGCACTTCCCTCGGGACATCTCCCCTAATGTCCATCAACACAGAGATGTGCTCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU80404 lncRNA downstream 10306 25261926 ~ 25264235 (-) True G64274
TU80380 lncRNA downstream 57848 25203124 ~ 25216693 (-) True G64258
TU80368 lncRNA downstream 135156 25136432 ~ 25139385 (-) True G64247
TU80346 lncRNA downstream 154945 25111110 ~ 25119596 (-) False AMCG00020581
TU80357 lncRNA downstream 173454 25100037 ~ 25101087 (-) True G64238
TU80488 lncRNA upstream 185010 25461427 ~ 25461642 (-) True G64340
TU80489 lncRNA upstream 187123 25463540 ~ 25464116 (-) True G64341
TU80490 lncRNA upstream 188460 25464877 ~ 25465350 (-) True G64342
TU80578 lncRNA upstream 364153 25640570 ~ 25643373 (-) True G64412
TU80594 lncRNA upstream 414991 25691408 ~ 25779211 (-) True G64418
AMCG00020581 mRNA downstream 162054 25111111 ~ 25112487 (-) False AMCG00020581
AMCG00020574 mRNA downstream 273413 24972749 ~ 25001128 (-) True AMCG00020574
AMCG00020575 mRNA downstream 323668 24947221 ~ 24950873 (-) True AMCG00020575
AMCG00020566 mRNA downstream 428113 24843010 ~ 24846428 (-) True AMCG00020566
AMCG00020564 mRNA downstream 453480 24814766 ~ 24821061 (-) True AMCG00020564
AMCG00020590 mRNA upstream 13085 25289502 ~ 25302972 (-) True AMCG00020590
AMCG00020592 mRNA upstream 49376 25325793 ~ 25329845 (-) True AMCG00020592
AMCG00020591 mRNA upstream 54656 25331073 ~ 25348318 (-) True AMCG00020591
AMCG00020594 mRNA upstream 196838 25473255 ~ 25479762 (-) True AMCG00020594
AMCG00020597 mRNA upstream 275173 25551590 ~ 25552969 (-) True AMCG00020597
TU80401 other downstream 32030 25242169 ~ 25242511 (-) True G64271
TU80385 other downstream 63478 25209059 ~ 25211063 (-) True G64260
TU80367 other downstream 135156 25121098 ~ 25139385 (-) False G64247
TU80345 other downstream 161990 25111110 ~ 25112551 (-) True AMCG00020581
TU80215 other downstream 596731 24676747 ~ 24677810 (-) False AMCG00020561
TU80419 other upstream 22385 25298802 ~ 25302981 (-) False AMCG00020590
TU80433 other upstream 53667 25330084 ~ 25330570 (-) True G64298
TU80656 other upstream 622011 25898428 ~ 25918630 (-) False G64470
TU80657 other upstream 622011 25898428 ~ 25905611 (-) True G64470
TU80934 other upstream 1969597 27246014 ~ 27249676 (-) True AMCG00020639

Expression Profile