RNA id: AMCG00020590


Basic Information

Item Value
RNA id AMCG00020590
length 4981
RNA type mRNA
GC content 0.47
exon number 7
gene id AMCG00020590
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 25289502 ~ 25302981 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GCCGCGTCCTGCCTGCATCAGCGGCTGTTCCCCCGGATCCCTCCAGCCGCCGCCTCCGCCGCCCTGCGAAACACGCCATGCAGTAGAAAACACAGCGGATCCGCAAACCACAGCCAGGTGGCTTGTCGTGGGGGGAGAGTGGCCAGGCTGCCGTGATGGTGCTGGACCCTGGCGGGGGCTTGGTGGAGAGAGCGGCAGGAAGGGGTACCCTGTCCGCAGAGCGGCCGGGTACCAGCAAGAGAGAGACGCCACGCAACGGCATGAGGCCCCATCCTTGGTCTGCCTCGGCATCCTTCAGCAATTCCAAAGGGATGGTGGGCTCCCGGGGGGCTGGTGGGGAGGAAGGGAAGGCAGCGGGGGCGGAGGTCAAGCGCCCCATGAGCCTGGAAGTGAAGCAAccgaaggaggagaagaaggggCCAAGCTGGCGGAGTGGCCGTGCGCCGGGGCCCCCCTCCCGCAGCCTCACCAGCCCAGTGTTCACCAGCCATGGCAGCTGGATGCGGCGCAGTGAGAGCACTATTGCCATGAAcggggggctggggggtggcCGGGGGCATATGAGACCAGCCACCTCTCTCCCCCATATCGCCCGTGGGGGGGCCACGCCACTGGCTGCCTCCCCCTCAGGGCCCCGGGGGACCTGCCTGCTCGTGGCCCTACGCCCCATCAACATTGACCGTGAGAGGGATACCTTCTTCAGATCGGATTTCCAGTACGATCCCCAGTTTGAGTACACAGAGCCCCAGCCCACCAGTGTGCTGGAGAAGTACTGCGAAGGTTCGGGACAGTTTCTATCACAGGCCGTGCGGATCATGCAGTGCGTCCTGAGGAAGTACGGCTCCTATGAGAGTTTCGAAGTGGCCACTGGGGGCAGCATCCTTCCCAAGAGCCGTGTCTGGGCATCCGTGCGCAAGTACCTGCAGAAGGAGCGCTGTGTGGGGGAGGTGGTGGTGCGCCTGTCGGAGGAGCTGCTGTCCCAGGCTGTGATGATGGTGGAGAGCTGCCGGCCGACCCTCACCATCAACTTGGCCGGGGCGCGCCAGCACTGGCTGGAGGGCATGCTGCGCCACGAAATTGGGACGCACTACATCCGAGGGGTGAACAATGGCCGCCAGCCCTGGCACAGTGCAGCTGGGCGCAAGCAGTTTGGGCTGAAGCCTGCCAACCCCACGGAGGAGGGCCTGGCCAGCCTGCACAGCGTGCTGTTCCGCAAAAACCCGTTCCTGTGGCGCGCCGCCCTGCTCTACTTCACGGTCTACCACGCCGGACACATGAGCTTCAGCCAGCTCTTCCACAGCATTGGGCAGTTCGTCCAGGACCCCGCTGTACGCTGGGAGTACTGCGTGAGGGCCAAGAGGGGCCAGACCGACACCTCCCGCCCAGGATGCTTCAGTAAGGACCAGGTGTATCTGGACGGCGTGCTGAGGATCCTACGCCATCGGAGGAACATTGACTTCAAAATGCTGGCCTCTCTGGGCAAGGTGTCATATGAGGACGTGGAGCACTTAAGAAAGTTCGCAGTCCTGGAGAGGACCCGCATCCCTCACTTCATGGAAGACCAGGAGCGATACCTCCAGCAGCTGGATCACATCATCACCATCAACGAGCTGGATGACGAGGAGCTGAGACAGCTCATACCATAGAGGAGCCCAGCCCTGCTGCCACTCTGCTACCACCTTGCCACCCTGCAACACGCGCAGCCAATGCCACCTGGCCCTCACTGCTAGGTTTCAAAACGAGAGAATCCAAAATGAAACCAAACGCAGCCTTTGCCAAAGTAATTATGCTGCTCCACTGGGAGATTTCCAATGTCCACCTTGAGTTTTCACCTGCTTTTGAAAACTAAATACGTATTTATCAATgactgtttgtatttatttgtattgtttttaatgacaatgaaaacaagaaTCCAGAAATATGAAATTGAGGATTTGCCTTATTTTGTAGCTGCTTTGATTTGAGAATGCTTACAAGAGCATGGTGgtgtgaaaaacaagaaattgaCAGAGATTGCCCCCATGGTCCAGTATAATTACCTTGGCTACTCttcttgctttattttattttttcattgattttgaatgtaagagaaaacacacacagactcatcCAGATCAGATGAGTCATTGCTGCAGTGTGGCCCTGGCCTCAGTTTAAGGGACTTCATGCCTTAACCCTTTGAGGAAAGTTTctgagggaaagaaaaagcatATCTTCTTAACTTTTGCCAAACCACTGCTTTACAGCTATTAGAGCTCAGCTGATTGGTTCCTCTCAATGCCCTGAAGAATCCATTGAAGTGGCAAGCAGGTAGCTGCAACTGGAAGCATCTTCATCGAGAAACTCCCATTGTGGACTGTGGAAACCATTAAGATTCCTCAGAGAGCTTGTTCTGAGGTGgtccttttttttaaagcccataaacaatacataaaaggTGAAATGTGTACAGCCttgttttaaacagatgttAAGTACCTCAGATGATTTAAGTTGAGctctaatttaaatatatacctCTTGTTGTTTGGTTACAGTAAGCATACTGTGCCTTTTTAGTGTTTAGAGAAtgaccctttttatttttttattttgtaaatgtcatCATTTGGCTTCACAAGCAATATTAtactttgattgttttttgttttttcttgtaagTCAGGGGAAAAGACAAATCTGGCAATTGTAGCATATCGAGATGTACAATTCCGATCAAGGCTTAATTGGCAGGCCAGGTTATAACTGGTTCTGTTGGAGCTCAATCCTCCAGGGTTTGCAGGAAGTTGTTCTGGCCAGGTTGAGAAGTAGATTAGCTTGGGTGGCACAATCACTTGCCATTGCAGTGATTGTCACCTTAGTATGGCGACTGAGTTAGAAATTGCATGTTTTCACTGAGGGGAAAATATTCTAAATGGCTTGACCAGCAGGTAACACTTAGTTGGGGATGGTGTTGCAAAATTATTAGAGATATTATGGATTGATGGATGGACCTCAAATGGAAACTGGAGGAGAACTGGAGGGAAGGCATTTTAATgatagtatttcatttttttccccttcaagggactaaagaaaatgtagtttgtgatagaaagaagaaaagtcTTAAAACCCAGGGGTCTTAAATGGTGTCTTGGGATGCTTGAATTGTGCTCTCTTAACCTATACTTGACAGAACCATGGACAGTGTTTCTAAAACATAAGCCTATCTTGCAGACATATGGGAATGGCATGGATGTCAACTTATTCTAGTGTTTATATGTGGATTAGTAATTATATCAAATggtgcaggaaaaaaaacaacctctaaGAACATCTAAGACAAGATAATGACTGGAAACAATAGCTCTTGTCCTGgagttgctgtttttgttttaggtcaACCTTAAGTCATCTTTGGCCTTGGCCCACTTTGGGCCTTCACATCTTCAATTAAGTACATGGAGAGATCATGTGCATCACAAATATCAGCACTCCTGCAGGCCTCAGTGACCAGAGTGGGCTGCCCtcaaaaatagatttttgcaGTAAGGAGAGATTGGACCACAGAGCAGAGAAGTGCAGCTTATACAAAGGAGTGCATTACACAGAAACTTTTAacaaatactattattatttggagATTTATGCAGCTGTTATTCCTTACTGTGGCGGTAATAGGAGTACATTTCCATTTGTGCACGACTAAGCACATTCTGATATAGGGGTAGCTTCACACAaagactgggagagagagagtgtgaagAAGTGTATAGGACGGGCAGACTTAATACATGTTGACTCTTTAAGAATGGTTTCCCTTCCTCAAAAATATATCGATCGCATTTCATATCAAAGGCTGAGGGTCAGTTGGAGATGGGCAGCAGTTTTTATCACAAGGATAGTTGCTTCCCTGGTGCTCTCAATTGCACTGTTTCACATCACGTAAAGAGAGATTCAGTGCGTTTACTGGCAACCTCGGAGATcaacagtgttttgtttctttgtttttgctttctgtgAAGTTACTCTAGTGCTACTGAGCTGCACATGCATTTTTGCCAGAGTTTGCCTGTGTTGCCTAATCCATATGTAAACGTGTCTGTTTGGAGTAGGACTGTGAAGTTAATTGGAGAGGGTGACGTTAAACTAAGGAGGACCACTTTATCTGGGCACCTGTAAACAAAGAGATACGTTTATGTGGTAGCAGTAGAGAAAATATACAAgctatactctctctctctctctttttttacaCAGGAAATTCACTGTTTTTGCTGGAGTTTATTTCTGGGGACAATTTGGTAACAACAGGGCCCAGTGTAgctctttaattaaaacaaaaaaacttagTAGTATAATTTGCACATCAAACATGCTGAAACAATCAACATATTCCAAAGGACAATAGGCAGACGATTAAATTCtccagtaaaaaataaaactactgtgggggaagaaaaaaaattccTTCAAAATAGGGGTTACTGTGCCTGTCAGGTGTAGAGAAACAGAGATCGTGGGAGGAGTGCCTAGTCTTAAAGACAGGCTCTGTGTGAGCTTGTGAGTAGTATTTaaaatttgtaatgaaaaaaatgatatatacatgtatgtatatcacTGTAACAAAGTGAGTCTGTCGAGACTGAACTGTAGATAACAACACCTTGTATTTTTTTGCACGACtatgtacttttaatttctttgtatttattataaagccACTGTAAACCTGAATTTATGTATGTGCCTTTTATTTGCATGTGCTGGTGTGAGCGTCTGGGCAGAAACAATACTGTCGATCGCTAGAGGACGAGGAATTTCAGACGCATTCTGCTTCACCTCTGACGTCACCTGACGGGAGATTATACCCTATGCAGCTACACGTATAGGGACAATAGAAAAaatgacaatacattttttgggcTGAGAtctgaacaacaaaaaatgtgttcaaatagTGAAAGTGAACATGTTCTCTACAACTCTACTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU80404 lncRNA downstream 25267 25261926 ~ 25264235 (-) True G64274
TU80380 lncRNA downstream 72809 25203124 ~ 25216693 (-) True G64258
TU80368 lncRNA downstream 150117 25136432 ~ 25139385 (-) True G64247
TU80346 lncRNA downstream 169906 25111110 ~ 25119596 (-) False AMCG00020581
TU80357 lncRNA downstream 188415 25100037 ~ 25101087 (-) True G64238
TU80488 lncRNA upstream 158455 25461427 ~ 25461642 (-) True G64340
TU80489 lncRNA upstream 160568 25463540 ~ 25464116 (-) True G64341
TU80490 lncRNA upstream 161905 25464877 ~ 25465350 (-) True G64342
TU80578 lncRNA upstream 337598 25640570 ~ 25643373 (-) True G64412
TU80594 lncRNA upstream 388436 25691408 ~ 25779211 (-) True G64418
AMCG00020589 mRNA downstream 5293 25272593 ~ 25284209 (-) True AMCG00020589
AMCG00020581 mRNA downstream 177015 25111111 ~ 25112487 (-) False AMCG00020581
AMCG00020574 mRNA downstream 288374 24972749 ~ 25001128 (-) True AMCG00020574
AMCG00020575 mRNA downstream 338629 24947221 ~ 24950873 (-) True AMCG00020575
AMCG00020566 mRNA downstream 443074 24843010 ~ 24846428 (-) True AMCG00020566
AMCG00020592 mRNA upstream 22821 25325793 ~ 25329845 (-) True AMCG00020592
AMCG00020591 mRNA upstream 28101 25331073 ~ 25348318 (-) True AMCG00020591
AMCG00020594 mRNA upstream 170283 25473255 ~ 25479762 (-) True AMCG00020594
AMCG00020597 mRNA upstream 248618 25551590 ~ 25552969 (-) True AMCG00020597
AMCG00020595 mRNA upstream 262611 25565583 ~ 25574610 (-) True AMCG00020595
TU80414 other downstream 13085 25274541 ~ 25276417 (-) False AMCG00020589
TU80401 other downstream 46991 25242169 ~ 25242511 (-) True G64271
TU80385 other downstream 78439 25209059 ~ 25211063 (-) True G64260
TU80367 other downstream 150117 25121098 ~ 25139385 (-) False G64247
TU80345 other downstream 176951 25111110 ~ 25112551 (-) True AMCG00020581
TU80433 other upstream 27112 25330084 ~ 25330570 (-) True G64298
TU80656 other upstream 595456 25898428 ~ 25918630 (-) False G64470
TU80657 other upstream 595456 25898428 ~ 25905611 (-) True G64470
TU80934 other upstream 1943042 27246014 ~ 27249676 (-) True AMCG00020639
TU81066 other upstream 2923563 28226535 ~ 28229647 (-) True G64811

Expression Profile