RNA id: AMCG00020591


Basic Information

Item Value
RNA id AMCG00020591
length 6180
RNA type mRNA
GC content 0.52
exon number 33
gene id AMCG00020591
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 25331073 ~ 25348318 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GGGCGGTGCTGTTGATGAGGGAAAATGGCGGCCCCCATGATGGCAATGCTGGTCTAATCCCGATCAATTGGATAAGCGTTTTTAACAGAACCGGGTTAATCCAGTGACAACGGACACTGTCGGAAACATGAAGACGTTTTGTGGCCGAGCCAACCCCACCACGGGTGCCCTGGACTGGGTGGAGGAGAGCGAGGAATATGACTACCATCAAGAGATCGCCCGGTCGTCCTATGCAGATATGCTTCATGACAAAGACCGGAATGAGAAGTATTACCTGGGCATTCGGGCAGCCGTGGCGAGGGTGAAGTCTCGGGGACAGCAGGCAGTGGTGCTGGACATCGGTACGGGCACTGGACTCCTGTCCATGATGGCAGTCAGCGCAGGGGCTGACTACTGCTATGCTGTGGAGGTGTTCAAGCCCATGGCCGAGGCCGCAACGAGGATCGTGGAGAAGAACGGCTTTAGCGACAGAATCAAGATCATCAACAAACACTCCACTGAAGTCACCGTGGGGCCAGAGGGAGACATGCAGACGCGGGCGAACATCCTGGTCACTGAGCTTTTCGACACAGAGCTCATCGGCGAGGGGGCACTGCCCAGCTACGAGCACGCCCACAAACACCTCGTTCAGGAGGGCTGTGAGGCAGTGCCACACAGAGCCACTGTGTATGCCCAGCTGGTGGAGTCTGAGCGGCTGTGGAGCTGGGCTCGTCTGCTGCCGCTGCGAGTGGGGGGGCGCGAGATACTGCCACCCCCCGAGATGGGCCTGTGTGCCGGGGCTCCCTCGGTCTGTGACATCCAGCTAAGCCAGGTGCCTCCCAGGCAGTTCACTACTCTGAGCCCTATCTGCACTATGTTCAGGGTGGAATTCAGCCAACCAGTGAGCAGCGCACCCCGGCAATACACTGTCCCTTTCCCTGCCGTCGCCACAGGCCAGGCACAGGTGGTCCTGTCCTGGTGGGACATCGACATGGACCCAGAGGGCACCATCAACTGCACCATGGCCCCGAGCTGGATGCACCCTGACCCTGACAAATACCCTTGGCGGGATCATtggatgcagtgtgtgtactTCCTGCCAGCAGAGGTGCCAGtgacagagggagaggcagTGAGCCTGACAGTCAGCCATGATGACTACAGCCTGTGGTACAACCTGGACAAatgcagCCAGCAGGGTGGGGACAGTGAGCATGGGGTGTGCAGACCGATGTGCACCTGCCAGGCCCACTTGGTGTGGACCAGGCCCCGCTTTGGAGAGCTCAACGACTCGCGCAGGACCGAGAGCTACACACAGGCCCTGCGCAGTCTGCTGAACCCAGACAgcgtgtgtctcagtgtgagtGACGGGAGCCTGCTGCCCATCTTCGCACAGCTCCTCGGGGCAAAGAAGGTTTACAGTTTGGAAAGCTCAGGGATGTTCAAACAAGTGATTGAACGGGTCCTACAGGCCAGTGCTCTGAGCGGCACAGTGCAAGTGTTGGAGTCCCGTCCTGAACAGCTGGCTGCCAGCTGGCGAGCGGCTGACAAGATCTCCCTGCTGATGGGGGAGCCCTACTTCAGTACCAGCCTCCTGCCCTGGCACTCCCTGTACTTCTGGTACTGTCGCACCGCACTGGCAGAGCAGCTGTGTAAGGACGCCATTGTGATGCCACACTCGGCCACGCTGTGTATGGTGGCGGTGGAGTTCAAGGACCTGTGGAGGATCAGAGCTCCATGTGGCTCGTGTGAGGAGTTTGACGTCAGTGCCATGGATGAGATGATACAGCGCTCTCTGGATTTTCGGGAATCCCGGGAGGCTGAGCCCCACCCCCTGTGGGAGTACCCATGCAGAGCCCTCTCCCAGCCATGTAAGGTCATGACATTTGACTTCCACCAGTGTGTCCCAGAGGAGCCAATGAAGAGCCAGGGATCAGTAGCGCTTGTGCGGAAGGGCAGGTGCCATGGAGTAGCCCTGTGGATGGAATACCACTTGACAGACGACATCACTGTGAGCACAGGTCTGGCAGGACCTGTCAGTGAAAAGggcAACTGTGAATGGAGTCCCCACCGGAAACAGGGTGTGTACTTCTTGAGTTCTCCGTGGGACAGTACTGGAGAGAGCCAGGACACTGTCCTCTATACTTTGACCTTTCACCCCCACAACGGTGACATCACCATGGAGTTCACAGCTGCAGCCTCAGACTGACCAGAGacattccattttaaataaatattttaactgtgTGTGGACAGTGTAATCCTACATCTGTGGAGACACGTGATGGATTCATACAAAACTGCAGATGAGGgttttttaaaccacatttacttaaaaagaaaacattcattttttgtttaaaaaaagtcagAGATATGCATGTTCAGAGTGCAACTATACATTGGAATAGACATGTCTGTACTTTACTAATGGAGAAAAGATCAGAAAATTAACACCCTTTCCAATTGTTTTTTCCAACAGCAGGTGCTCTAAACAGACATTAATAAGACTTCCAGGCCTGCCTTTAAGATCCTACcaattgtacattattaaagGGTCATGGGGTGCAGTGCCAGTGTCAAATGAATCTGGGTAGAGTATTTCAGAGTTTTTGTAGCATTCAAAACACAGACTGCTGCTTTATCCATATCCTTACACctacagatattttattcagccAATGACATTTGAGGTTATTTTCTAGCTATATAGTTACACTATTTTATTCTTATGCTAACTTATTTAACAAACAAGTCTGAATCTATCTTATGTATATTATATCTTACTGGAACCCTTTATTAAACCACATATACTATATACAGGGAGACTTCTCAATGAGTGACAGGGAAAGAGAGCACACTGGAATGCATGAGATTATCAACCTAGTCAATCTCATTATCATACAATTCTTTGCATTTTATCATTTAGACACTTGCTAACAGAAAGCTCCGGTGGGGAATCCAAggcaaaaataaactgcaggaTAGTCCCTGAAAGGGGGTCCTTGGAACACACACCCTACAATCATCCTGCTGAAACGTGTCGATTGTAGACTGGTGCTCCCTGGGGGCAAGCCTCCCTCTGTCCCGCTGTGTGAGGGGTTGGAAATGGGCCGTTCTGCGTTCTAGGCATCGGTGAGCTGCGTCTCCTGCAGCACGATCTTCTCTCCGGGCTTGAAGGCAGGCATTCCCAGGTAGGGACAGCTAGCACAGCGGAAGGCATCTCCTAAATAGCACTGCATGAGAGGCGGACTTGGGCTGGTCATGCTTCTGCGCTCCTTGGCTCTCCTGCTCAAGCTCCTCTGCCAGCCCACAGGTACAGTTCTTGCAGGCCTTCTTCTTCTTGGTGGCCCCTTCTCCACAGCTGGGGGCCCTCAGAGTGGCTGGGTCTGGCTTCTTCCGGTCCTCTTCATTTAAGAGCGTATCTGAGTCCATCAGATCCTGAGATCGTCGTCGTTGATGTCTGCGGCTGACAGCGTCCACATCTTAGCTGCGCCCGGGTCCAGGGCAGGCTTTTCTGTAGGATTTTTCTTTCCAAAGGAGAGCTTCAACTGGCTGGACGAGCCCACTTCAAAGTTGGGTTTACTGGCAGACATTCGAACTATGGACAGGTCATTGCCTTCGTAACCGGTTGCCTTCTTCACTGATGCAGCAGCTTCTGAGCTCAGCGGCTCATTTTTTAGCTTAAAACAGCCACCAGTCCTGACAGCTTCAGTGCTGAAATGAGTTTGCTGGCAGTTTTCACTTTGCTGTCATTACCCGATGCAGTTATGGGCTCCTCCAGGATAAGTTTCCCCCCTGGTTTTGTCACCCGTGCCATTTCTGCCAGCGTCTCTGAGCTGTGTACGGTGGGGCTGTTACCCAGTAGGCCAGACAGAACCCAGTCATGGCTGGACTCGGGGTGAGAAGACAGCAGTAGTCGGTCAATGTTCTCCAGCGACACCTGACCCTGGGCTCCCACTGCTTTCCCCAGGCTTTCGGCCAGCTCCTTCAGAGCCTCGGGATAGGAAGGCTGACCCCACACCAGCATCACCCTGTCTCCCTCTTTCACACCCAGCTCCGCCATGCTTCAGTCAGCGCTGCAGGTGTTGTCCTCGTTCAGCAATTGGAAGTAGACTCCAATCCAAAAATCGTGTTTGCAAGTGGGACAGATGTAGAAAAACGTGAAACCAAAAAGCAGTATATTATCTCTTCAACctcaatttttgtatttataacacCCGATAATTAGACTAGCTATTTAACAaagttacacacacaaacaactccAGATGGCTTCACCTTTCTCGACCAGCAGCCGGGAATGCGCTGACGTTTAACCGACtgcgacagacagacagacagacagacagacagagggagtcGCGGCGCAGTGACGTGTGAGAACTGGAAGCGCTGCAGTCGCGGCTAGATATGGCGGCGCTGCTGAGGGGAGTGAGAGCCGGGAGGGTCTTTCTGGCCCTGGGAACCGCACAGAGAAGCAGTAACAGTGTGAAGAGGGTTTTTCACAGAGCGGCCCTGTTGAGACTCCAGGATGAAAGCAAACAAGAGCAGCCTTCTTCATCCTCTTACCATCAGCACTACCAGGCCTCCTCTTCATCTGGGCAGGAGACTTCACAAACCAACATTAGCTATGCAGATCAGAGCGGGGAACAGGGGGAGGACTATGAGACAGAGGAACAGCTCCAGGGGCGGATCCTCACGGCAGCTCTGGAATTTGTGCCACAGCATGGCTGGACTGTGGACGCCATCGCAGAGGGAGCGCAGACACTGGGTCTGTCAGCAGCAGCGGCAGGGATGTTCAGTAATGGTGCTGGAGATCTGGTCCTGCACTTCATCAGCCAGTGTAACTCCCGCCTGTCTGAGTCTATGGCAGAGCAGCACAAACAGATCCAGCTGGGCCAGGCCGAGCCAAAGAAAACGGATGAGTTTTTGAGAGAGGCGGTGGAGGCCAGACTGCGCATGCTAATCCCGTATATCGAAAACTGGCCTCAGGCCATGAGCATTTTGCTGCTGCCCCAGAACATCCCTGACAGTCTGAAGCACCTCTCCACCCTGGTAGATGATATCTGGTACTATGCTGGTGACAGGTCTACAGATCTCAACTGGTACACACGGCGTGCCACCCTGACTGGTATTTACAACACCACGGAGCTGGTGATGGTGCAGGACTCCTCGCCTGATTTCCAGGACACCTGGGCTTTCCTCGACAACCGAATCCGTGACGTCATGAACATGGCCAACACTGCCAAACAGGTTCAGTCCACGGGTGAAGCTGTAGTACAGGGAATTATGGGAGCTGCCATCACTcTGAAGAACCTAACGGGAATGAACCAGCGACGGTGATGGGGACTTGGGACCCACAGGCTCTGTATCAGAACTGATTGTCCATCTTCTCTTCTTTGTTGCCCCACCTGGCCCAGTCACACTCTTACCTCCATGTCTCCTGCTCACACACAACTGAGACTTCTGCCGTTCCCCCCCCAACTCTCCCACACACCATTACAGTTCAGCTGTTTGAAAGTCCCTCCCGCCTGCGTGATTCATTCAAAAACCATGAAAGCAATATTGGATCATGCAGCACCCTCTTGATATTtcaccattttaattttttttaatggtgccATTTAAAGCTCTCCAATGATATCATGGTGCAGCCATCTGACACGGACATCAAACTCTGTTGTGCTTATGCTGCTGTTCCTTTGCCTGATCTTGGAGAGAGAACAACTCAACTTGCCTGCTGTGTTTTGTGCACTGCAGTTATTTTTCTGTAAGCTTCCTCTTCATGctgaaaaacatgcattagGTTTTTGAATCTAATGCTGAAACCTGCAAAAACCTTTCTACCGTATGTCAATATGCTTTTGCAAACAAGCTCCTGTGTTCAGGCTTGAGGCATTGCAGCTGATACATGTGCCATAGGCTGGTGTAGAGTCCTATCAAGCTAAATTAGCCTGCTTTGTGGGAGAACACTGTTTTTGTGTCCATCTCCATTGGAAAGGATCCTCATGCccctttgtaaaatataacgGAAACTAGAAAGGTAActgttctaaatgtattaaagacATCTTACAGATTGTGGTCTTTAAGATTGTTCACATCAATAAATTTATTCTGAAACATGCATCAGGACTCTTTCTTGTCAAGTAAAGCAGAGACATGATGCTTAATGTTTAAGGGGAGAAAATATACAAG

Function

GO: NA

KEGG:

id description
K11438 PRMT7; type III protein arginine methyltransferase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU80404 lncRNA downstream 66838 25261926 ~ 25264235 (-) True G64274
TU80380 lncRNA downstream 114380 25203124 ~ 25216693 (-) True G64258
TU80368 lncRNA downstream 191688 25136432 ~ 25139385 (-) True G64247
TU80346 lncRNA downstream 211477 25111110 ~ 25119596 (-) False AMCG00020581
TU80357 lncRNA downstream 229986 25100037 ~ 25101087 (-) True G64238
TU80488 lncRNA upstream 113109 25461427 ~ 25461642 (-) True G64340
TU80489 lncRNA upstream 115222 25463540 ~ 25464116 (-) True G64341
TU80490 lncRNA upstream 116559 25464877 ~ 25465350 (-) True G64342
TU80578 lncRNA upstream 292252 25640570 ~ 25643373 (-) True G64412
TU80594 lncRNA upstream 343090 25691408 ~ 25779211 (-) True G64418
AMCG00020592 mRNA downstream 1228 25325793 ~ 25329845 (-) True AMCG00020592
AMCG00020590 mRNA downstream 28101 25289502 ~ 25302972 (-) True AMCG00020590
AMCG00020589 mRNA downstream 46864 25272593 ~ 25284209 (-) True AMCG00020589
AMCG00020581 mRNA downstream 218586 25111111 ~ 25112487 (-) False AMCG00020581
AMCG00020574 mRNA downstream 329945 24972749 ~ 25001128 (-) True AMCG00020574
AMCG00020594 mRNA upstream 124937 25473255 ~ 25479762 (-) True AMCG00020594
AMCG00020597 mRNA upstream 203272 25551590 ~ 25552969 (-) True AMCG00020597
AMCG00020595 mRNA upstream 217265 25565583 ~ 25574610 (-) True AMCG00020595
AMCG00020601 mRNA upstream 241696 25590014 ~ 25595268 (-) True AMCG00020601
AMCG00020602 mRNA upstream 295429 25643747 ~ 25681156 (-) True AMCG00020602
TU80433 other downstream 503 25330084 ~ 25330570 (-) True G64298
TU80419 other downstream 28092 25298802 ~ 25302981 (-) False AMCG00020590
TU80414 other downstream 54656 25274541 ~ 25276417 (-) False AMCG00020589
TU80401 other downstream 88562 25242169 ~ 25242511 (-) True G64271
TU80385 other downstream 120010 25209059 ~ 25211063 (-) True G64260
TU80656 other upstream 550110 25898428 ~ 25918630 (-) False G64470
TU80657 other upstream 550110 25898428 ~ 25905611 (-) True G64470
TU80934 other upstream 1897696 27246014 ~ 27249676 (-) True AMCG00020639
TU81066 other upstream 2878217 28226535 ~ 28229647 (-) True G64811
TU81116 other upstream 2976989 28325307 ~ 28328312 (-) False AMCG00020661

Expression Profile