RNA id: AMCG00020592


Basic Information

Item Value
RNA id AMCG00020592
length 828
RNA type mRNA
GC content 0.53
exon number 9
gene id AMCG00020592
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 25325793 ~ 25329845 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGCCGTATGCCAACCAGCCTACGGTGAAAATTACTGAACTTACAGACGAGAATGTGAAGTTTGTCATAGAGAACACGGATCTGGCGGTGGCGAACTCCATTCGGCGAGTGTTCATGTCCGAAGTCCCCACGATAGCTATCGATTGGGTTCAGATTGATGCCAATTCCTCTGTCCTCCATGATGAATTCATTGCTCACAGAGTGGgtcTGATTCCACTAACAAGTGATGACATTGTGGACAAGATGCAGTACTCCAGGGACTGTACGTGTGATGAGTTCTGCCCAGAGTGCTCTGTGGAGCTGACCCTGGATGTGCGCTGTACAGAGGACCAGACCCGGCACGTCACATCCCGGGACCTTCTCTCTAATAACCCCCGCGTCATTCCGGTAACATCACGGAACCGTGATAATGACCCTAATGACTATGTTGAGCAGGACGATATCTTGCTGGTGAAGTTGAGGAAAGGCCAGGAGCTGCGTCTCCGAGCCTATGCCAAGAAGGGCTTCGGGAAGGAGCACGCCAAGTGGAACCCCACAGCGGGGGTGTCCTTTGAATACGACCCCGACAatgcactgagacacacagtcTTCCCCCGACCAGAGGAATGGCCTAAAAGTGAGTACTCTGAGATCGATGAGGACGAGGTGCAGGCTCCCTATGACCCCAATGGCAAACCGGAGAGGTTCTTCTACAACGTGGAGTCGTGTGGATCCCTGCGGCCTGAGACCATTGTCATGTCTGCCCTGGCCGTCCTGAAGAAGAAGCTCAGTGACCTGCAAACCCAGCTGAGCCATGAAATCCAGAGTGATGTCCTCACCATCAACTGA

Function

GO:

id name namespace
GO:0006351 transcription, DNA-templated biological_process
GO:0003899 DNA-directed 5'-3' RNA polymerase activity molecular_function
GO:0046983 protein dimerization activity molecular_function

KEGG:

id description
K03011 RPB3, POLR2C; DNA-directed RNA polymerase II subunit RPB3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU80404 lncRNA downstream 61558 25261926 ~ 25264235 (-) True G64274
TU80380 lncRNA downstream 109100 25203124 ~ 25216693 (-) True G64258
TU80368 lncRNA downstream 186408 25136432 ~ 25139385 (-) True G64247
TU80346 lncRNA downstream 206197 25111110 ~ 25119596 (-) False AMCG00020581
TU80357 lncRNA downstream 224706 25100037 ~ 25101087 (-) True G64238
TU80488 lncRNA upstream 131582 25461427 ~ 25461642 (-) True G64340
TU80489 lncRNA upstream 133695 25463540 ~ 25464116 (-) True G64341
TU80490 lncRNA upstream 135032 25464877 ~ 25465350 (-) True G64342
TU80578 lncRNA upstream 310725 25640570 ~ 25643373 (-) True G64412
TU80594 lncRNA upstream 361563 25691408 ~ 25779211 (-) True G64418
AMCG00020590 mRNA downstream 22821 25289502 ~ 25302972 (-) True AMCG00020590
AMCG00020589 mRNA downstream 41584 25272593 ~ 25284209 (-) True AMCG00020589
AMCG00020581 mRNA downstream 213306 25111111 ~ 25112487 (-) False AMCG00020581
AMCG00020574 mRNA downstream 324665 24972749 ~ 25001128 (-) True AMCG00020574
AMCG00020575 mRNA downstream 374920 24947221 ~ 24950873 (-) True AMCG00020575
AMCG00020591 mRNA upstream 1228 25331073 ~ 25348318 (-) True AMCG00020591
AMCG00020594 mRNA upstream 143410 25473255 ~ 25479762 (-) True AMCG00020594
AMCG00020597 mRNA upstream 221745 25551590 ~ 25552969 (-) True AMCG00020597
AMCG00020595 mRNA upstream 235738 25565583 ~ 25574610 (-) True AMCG00020595
AMCG00020601 mRNA upstream 260169 25590014 ~ 25595268 (-) True AMCG00020601
TU80419 other downstream 22812 25298802 ~ 25302981 (-) False AMCG00020590
TU80414 other downstream 49376 25274541 ~ 25276417 (-) False AMCG00020589
TU80401 other downstream 83282 25242169 ~ 25242511 (-) True G64271
TU80385 other downstream 114730 25209059 ~ 25211063 (-) True G64260
TU80367 other downstream 186408 25121098 ~ 25139385 (-) False G64247
TU80433 other upstream 239 25330084 ~ 25330570 (-) True G64298
TU80656 other upstream 568583 25898428 ~ 25918630 (-) False G64470
TU80657 other upstream 568583 25898428 ~ 25905611 (-) True G64470
TU80934 other upstream 1916169 27246014 ~ 27249676 (-) True AMCG00020639
TU81066 other upstream 2896690 28226535 ~ 28229647 (-) True G64811

Expression Profile