RNA id: AMCG00020605


Basic Information

Item Value
RNA id AMCG00020605
length 942
RNA type mRNA
GC content 0.58
exon number 7
gene id AMCG00020605
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 25728979 ~ 25737475 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GCTCTGCAGAGACAGGCTGAGCAGCTGGGCGTCCCTGTGGGCTTGCTGTCCGTGCGGACCGTGGTGGAGAGGCTGTGGGAGCTGTCTGCGCCAGTTGAGGGATATACTGACCATGTCCTTCTGAACACAGTGAAGAGGGTCTCTCCTCGGGTTAGCCAGGATCTCGACTCACCAGCACTAGAAGATGCCAGTACAGAGTTCTCTCCTAATACTACCTCTGATAGCCAAgTGGTGCAGTCTCTGGGCTTCACTATCTATCGGGCTCTGAACTGGGGGCTGTACGAGAGCGAGGAGCAAGAGCTGAGTCCCCAGCTGGAGTGTCTCATTGAGCTGATGAAGAGGGGGGATAGCAAGGACAGCGGCCAGGAGAAGGAGGCAGAGGGGCTGCGCCACGCAGAGCTCTCCTTTCATAGGGTGATGACGATGTGTGCTGCCCACCTCGCCGACCCCTTACAGGCTAAGGATGACTACAAGGCTGTCTGCAGGGCCCTCTTTTTGGAGACACTGGAGCTGCAGACCTTCCTGTTCAAAAGCAGGGATGCCAAGGAGGCCCCCATCTCGCTCCAGCTGATGAGCGGCCTGCGCTTTGCCGTAAAGCTAAAGAAAGTGCAGGAGCGGCAGTTCAAGCCGCTGCCCATCAAGTTGTGCCTCGCACCCTACGAGATACTCATGCAGGACATCCTAACTCGCAACTACAAGCTGCGCAAAGTCAtgGCCCCCGTCTCGCTCCAGCTGATGAGGGACCTCTGTCATGGTGTGAAACTAAAGAAGGTGCAGGAGCAGCAGCTTGACCCGCTGCCCACTGAGTCCCTGCGCAGCCTCACGCGgccctctgtggaggaggagtTCCCTCACCTCTATGCCAGCGGCTGCAGCCTGAAGGACATCTGCCCTGAATGCACCCAGTTTATGGGCGACGTCATCACCTCTGAAAGGACCTTG

Function

GO:

id name namespace
GO:0005737 cytoplasm cellular_component

KEGG:

id description
K02098 SPIR; spire

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU80595 lncRNA downstream 13522 25714135 ~ 25715457 (-) False AMCG00020604
TU80596 lncRNA downstream 14056 25714135 ~ 25714923 (-) False AMCG00020604
TU80578 lncRNA downstream 85606 25640570 ~ 25643373 (-) True G64412
TU80490 lncRNA downstream 263629 25464877 ~ 25465350 (-) True G64342
TU80489 lncRNA downstream 264863 25463540 ~ 25464116 (-) True G64341
TU80665 lncRNA upstream 157677 25895152 ~ 25895866 (-) False AMCG00020614
TU80672 lncRNA upstream 194224 25931699 ~ 25932142 (-) True G64477
TU80685 lncRNA upstream 197426 25934901 ~ 25935451 (-) False AMCG00020613
TU80719 lncRNA upstream 247973 25985448 ~ 25989689 (-) False G64510
TU80718 lncRNA upstream 250343 25987818 ~ 25989689 (-) True G64510
AMCG00020604 mRNA downstream 14077 25687275 ~ 25714902 (-) True AMCG00020604
AMCG00020602 mRNA downstream 47823 25643747 ~ 25681156 (-) True AMCG00020602
AMCG00020601 mRNA downstream 133711 25590014 ~ 25595268 (-) True AMCG00020601
AMCG00020595 mRNA downstream 154369 25565583 ~ 25574610 (-) True AMCG00020595
AMCG00020597 mRNA downstream 176010 25551590 ~ 25552969 (-) True AMCG00020597
AMCG00020612 mRNA upstream 124280 25861755 ~ 25867205 (-) True AMCG00020612
AMCG00020614 mRNA upstream 148575 25886050 ~ 25905598 (-) True AMCG00020614
AMCG00020615 mRNA upstream 173087 25910562 ~ 25917773 (-) True AMCG00020615
AMCG00020613 mRNA upstream 197426 25934901 ~ 25948343 (-) True AMCG00020613
AMCG00020620 mRNA upstream 222903 25960378 ~ 25965307 (-) True AMCG00020620
TU80433 other downstream 398409 25330084 ~ 25330570 (-) True G64298
TU80419 other downstream 425998 25298802 ~ 25302981 (-) False AMCG00020590
TU80414 other downstream 452562 25274541 ~ 25276417 (-) False AMCG00020589
TU80401 other downstream 486468 25242169 ~ 25242511 (-) True G64271
TU80385 other downstream 517916 25209059 ~ 25211063 (-) True G64260
TU80656 other upstream 160953 25898428 ~ 25918630 (-) False G64470
TU80657 other upstream 160953 25898428 ~ 25905611 (-) True G64470
TU80934 other upstream 1508539 27246014 ~ 27249676 (-) True AMCG00020639
TU81066 other upstream 2489060 28226535 ~ 28229647 (-) True G64811
TU81116 other upstream 2587832 28325307 ~ 28328312 (-) False AMCG00020661

Expression Profile