RNA id: AMCG00020645


Basic Information

Item Value
RNA id AMCG00020645
length 591
RNA type mRNA
GC content 0.50
exon number 5
gene id AMCG00020645
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 27421048 ~ 27425477 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ACTGCGATGTTGAACAAGCACCTTCACTCTCTGATGCCTGGGCTCTCAGCAAAGGTTTTCCGAACGTACAATGCCTCGGtcacactgcagcagcagcttAAAGAGCTCACCACTGTGACAGATAATGTTCCTGAGAAGATCCTGTCCTACAACAGAGCTAACCGGGCGGTTGCAGTTCTATGTAACCACCAGCGGGCTCCGCCAAAGACCTTTGAGCAGTCCATGGCCAACCTTCAGTCCAAGATCGAGAGCAGGAAAGAGCAGCTCAACTTGGCAAAGAAGGAGCTGAAGCAAGTGAAGAAAGAGGCGAAAGGCAATTCCGACAAGAAACTCTTAGTGACtgtggagaagaagaagaaagctgTTCAGAGATGTGAGGAGCAGCTGATGAGGATGGAGCTACAGGTGACGGACAGAGAAGAGAACAAGCAAATCGCCCTGAGCACCTCCAAGCTAAACTATCTGGACCCCAGAATCAGTATAGCCTGGTGTAAGAATGTGGAGGTGCCTCTGGAGAAGATCTATAACAAAACTCAGCGAGACAAGTTTGCCTGGGCCGTAGACATGACTGAAACCGACTTTGTGTTCTGA

Function

GO:

id name namespace
GO:0006200 obsolete ATP catabolic process biological_process
GO:0006265 DNA topological change biological_process
GO:0005694 chromosome cellular_component
GO:0003917 DNA topoisomerase type I (single strand cut, ATP-independent) activity molecular_function
GO:0003918 DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) activity molecular_function
GO:0003677 DNA binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU80977 lncRNA downstream 402 27420366 ~ 27420646 (-) True G64745
TU80932 lncRNA downstream 184726 27236083 ~ 27236322 (-) True G64708
TU80850 lncRNA downstream 675225 26745549 ~ 26745823 (-) True G64632
TU80848 lncRNA downstream 688760 26731435 ~ 26732288 (-) True G64630
TU80847 lncRNA downstream 690937 26729855 ~ 26730111 (-) True G64629
TU81054 lncRNA upstream 736125 28161602 ~ 28187431 (-) False AMCG00020657
TU81047 lncRNA upstream 760132 28185609 ~ 28187431 (-) False AMCG00020657
TU81049 lncRNA upstream 760132 28185609 ~ 28239074 (-) False AMCG00020657
TU81115 lncRNA upstream 891292 28316769 ~ 28323164 (-) True G64847
TU81159 lncRNA upstream 1432512 28857989 ~ 28858354 (-) True G64886
AMCG00020643 mRNA downstream 12936 27406955 ~ 27408112 (-) True AMCG00020643
AMCG00020644 mRNA downstream 134976 27281615 ~ 27286072 (-) True AMCG00020644
AMCG00020647 mRNA downstream 151605 27259852 ~ 27269443 (-) True AMCG00020647
AMCG00020639 mRNA downstream 172103 27247899 ~ 27248945 (-) False AMCG00020639
AMCG00020635 mRNA downstream 312768 27102401 ~ 27108280 (-) True AMCG00020635
AMCG00020646 mRNA upstream 10192 27435669 ~ 27474732 (-) True AMCG00020646
AMCG00020649 mRNA upstream 97147 27522624 ~ 27523548 (-) True AMCG00020649
AMCG00020650 mRNA upstream 173737 27599214 ~ 27711704 (-) True AMCG00020650
AMCG00020651 mRNA upstream 326717 27752194 ~ 27786025 (-) True AMCG00020651
AMCG00020652 mRNA upstream 369779 27795256 ~ 27857618 (-) True AMCG00020652
TU80934 other downstream 171372 27246014 ~ 27249676 (-) True AMCG00020639
TU80656 other downstream 1502418 25898428 ~ 25918630 (-) False G64470
TU80657 other downstream 1515437 25898428 ~ 25905611 (-) True G64470
TU80433 other downstream 2090478 25330084 ~ 25330570 (-) True G64298
TU80419 other downstream 2118067 25298802 ~ 25302981 (-) False AMCG00020590
TU81066 other upstream 801058 28226535 ~ 28229647 (-) True G64811
TU81116 other upstream 899830 28325307 ~ 28328312 (-) False AMCG00020661
TU81155 other upstream 1363103 28788580 ~ 28796956 (-) True G64882
TU81300 other upstream 1955838 29381315 ~ 29405636 (-) True G65000
TU81316 other upstream 2104442 29529919 ~ 29533117 (-) False AMCG00020685

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) TU214098 True 220 lncRNA 0.51 1 CI01000041 776761 ~ 776980 (+)
mexican tetra (Astyanax mexicanus) TU214098 True 1258 lncRNA 0.45 8 NC_035914.1 12741848 ~ 12758089 (+)