RNA id: AMCG00020649


Basic Information

Item Value
RNA id AMCG00020649
length 615
RNA type mRNA
GC content 0.56
exon number 4
gene id AMCG00020649
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 27522624 ~ 27523548 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGTTGATGGTCGGGACTGACACCGCTTCCTCGGGAGTTATCCAGCTTCTGGACTGGTATCAGCTGCCGGAGGAAGTGCTTCTGGTCCAGGAGCGACCCGATCCGTGCAAGGACCTTTTTAAGTATGCTGTGGACCAAGGAGACTGCCTAGAAGAATCTGAGGCCAGGAGCTTCATGAAGCAGCTGATAAAGACCATTCAGCACTGCCACGAGCGCCGAGTCCTGCACAGAGACATCAAGCCCGAGAACATCCTCGTGCAGCTGGACACGGGCAAGCTAAAACTCATCGACTTCGGCTGTGCATGCATCCTCCACGACTCGGTCTACAACAGCTTCAGCGGCACATCGGAGTACAAAACTCCCGAATGGCTCCTGCATGGTGGTTACCGAGGAGTCCCAGCCACTATCTGGTCCCTGGGAGTCCTGCTGTTCGATGTGGTCTGTGGATACCTGCCCTTCAGCACAGATGAGGAGATAGTACATGGTGTGCTGGACTTCCCATCAGATGTCTCCACAGATTGCCAGGACTTGATCCGGACCTGCCTGGCCCACAATCCAGAGGACCGGCCAACCCTGGAGCAGATTCTGCGCCACCCATGGTTGAGgTCTGCCTGA

Function

GO:

id name namespace
GO:0016301 kinase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU80977 lncRNA downstream 101978 27420366 ~ 27420646 (-) True G64745
TU80932 lncRNA downstream 286302 27236083 ~ 27236322 (-) True G64708
TU80850 lncRNA downstream 776801 26745549 ~ 26745823 (-) True G64632
TU80848 lncRNA downstream 790336 26731435 ~ 26732288 (-) True G64630
TU80847 lncRNA downstream 792513 26729855 ~ 26730111 (-) True G64629
TU81054 lncRNA upstream 638054 28161602 ~ 28187431 (-) False AMCG00020657
TU81047 lncRNA upstream 662061 28185609 ~ 28187431 (-) False AMCG00020657
TU81049 lncRNA upstream 662061 28185609 ~ 28239074 (-) False AMCG00020657
TU81115 lncRNA upstream 793221 28316769 ~ 28323164 (-) True G64847
TU81159 lncRNA upstream 1334441 28857989 ~ 28858354 (-) True G64886
AMCG00020646 mRNA downstream 47892 27435669 ~ 27474732 (-) True AMCG00020646
AMCG00020645 mRNA downstream 97147 27421048 ~ 27425477 (-) True AMCG00020645
AMCG00020643 mRNA downstream 114512 27406955 ~ 27408112 (-) True AMCG00020643
AMCG00020644 mRNA downstream 236552 27281615 ~ 27286072 (-) True AMCG00020644
AMCG00020647 mRNA downstream 253181 27259852 ~ 27269443 (-) True AMCG00020647
AMCG00020650 mRNA upstream 75666 27599214 ~ 27711704 (-) True AMCG00020650
AMCG00020651 mRNA upstream 228646 27752194 ~ 27786025 (-) True AMCG00020651
AMCG00020652 mRNA upstream 271708 27795256 ~ 27857618 (-) True AMCG00020652
AMCG00020653 mRNA upstream 339927 27863475 ~ 28035409 (-) True AMCG00020653
AMCG00020658 mRNA upstream 613682 28137230 ~ 28147847 (-) True AMCG00020658
TU80934 other downstream 272948 27246014 ~ 27249676 (-) True AMCG00020639
TU80656 other downstream 1603994 25898428 ~ 25918630 (-) False G64470
TU80657 other downstream 1617013 25898428 ~ 25905611 (-) True G64470
TU80433 other downstream 2192054 25330084 ~ 25330570 (-) True G64298
TU80419 other downstream 2219643 25298802 ~ 25302981 (-) False AMCG00020590
TU81066 other upstream 702987 28226535 ~ 28229647 (-) True G64811
TU81116 other upstream 801759 28325307 ~ 28328312 (-) False AMCG00020661
TU81155 other upstream 1265032 28788580 ~ 28796956 (-) True G64882
TU81300 other upstream 1857767 29381315 ~ 29405636 (-) True G65000
TU81316 other upstream 2006371 29529919 ~ 29533117 (-) False AMCG00020685

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000047_06574147_06577660.mRNA True 1588 mRNA 0.55 3 CI01000047 6574048 ~ 6577979 (-)