RNA id: AMCG00020677


Basic Information

Item Value
RNA id AMCG00020677
length 2282
RNA type mRNA
GC content 0.44
exon number 11
gene id AMCG00020677
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 29059415 ~ 29071096 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CCTAAAGTGTGAATTGGCTGTAAACGGGTGCAGTGCCTCGTCCCCAGCGTTGCGACAGAAGCAGACGTGTTTTACGGTAATATTGCCATGGCAACCCAGGACGCCTGAACAAAGCCAACGTTTGAAAGCGGCTCCTTGCAGAGAAAAAGCAGATTCACCTTCACACTCCGCCGGTGAATACCGGCCACAGCGAGGACATGCCCTTATCAAACCGCAGCAGCGACCCCCTGTCTGTGCAAGAGGCCGCGgaagagcagcagcaggggAAGACGTCGGGCTGGGCGCATCAGCAGCTGTCCCGGATCCCCATTAAAGTTTTTAGAAGTCACACTGATGCCATCAGCAGTTGCCATTTCTGCTTTGAAGACAGTAAAATCCTTACCTGCTCCTATGACAAAACTGCAATCCTCTGGGATGCTGAAAGTGGAGATCCTGTACTGGCCTTTGAGGGGGGACACTCAGCGCCAATCGTTGAATGCGCTTTGACTCCTGACAACAAAAGTGCTCGATCCCCTGATGACCATTTAAAAGACTTACCAATGCAAGCCACAGTGCTTATGCCCATTCAAGCAAAGTGGAAGGCAGTTCATGATGGCCTCCTAACGTCATGTAGCGTGTCTCTGGATGGAAAGTATGTGGCGTCTGCCTCTGATATGGAGAACGCTCTCTACGTTACCTGTGCTGAAACTGGTGAAAAGGTCTTTCATATCAAAGACCATCACAAATCCACCGTGACAAGATGTCGATTTGATCCAGGCAGCCAGCGTGTGGCCACTGTCTCGGCGGACAAGACCATCAAACTTTGGGATCTTGTTGCACGCAGGACGACCCTTTCAATAAACAGCACTCACTCCAATGTGATCTCCAACTGCTGTTTCACCAGCAATGGGCGGCACTTGTGCACGGCATCGTGGGATAAAACTTTACAGCTATGGGACATCCAGACAGGGCAGTTTCGCTCTCGGGGAGGAGTGAAGCTCCACAAAGGGCATGAAGGCAACATCAGCTCCAGTGTTTTCTCTCAGGACTCATCTCTCCTCGTATCGGGCGCCTGTGACAGGAATGTGACTGTCTGGGACATGGAAGGACTTTGTAAAAAACTGGTTCTCAAGGGACATGTGGACTGGGTAATGGATGTTGCAATCAGCGCTGACAAAAAATGGGTTGCTTCAGGCTCTAAGGACACCACGTTGAGAATGTGGAACATCGAACACTCGGACCACATTCCAGCAGTCATTGAAACAAGGAAGGCCGCAGGATTTCAAATAATCAAGTGTGAACTGTGCAAAAAGCCTTTCTCCATCACCCAGATGGAGAATTCCGAGTTCATTTCCAAGTGTGTCTTCTGTCGACTGATGGCTCCTTCCCGAAATTACCTTCCAGCCCCACCTGCTCTTTGACCTCACCTGGGGAGCTGCAGACACACTGATGGGACTTCAGTATAGGACATGAAGCTGTGTGATCTGTTGTCTCTTCTGATGCTTATGTATTGCAATTGCCTCGCAGTTTGTATGATTCGATAAGTAATTCATAATAATTGTTCATTACACACCTTGGTCAAAATACAGTGAAGTTCTTACTTATTATTATCTCTAGACTTGcacttttctttcttgaatTGCCTGCAATTCTAATCTAATGGGCTTGTTCTGCTGATAAACTTGTATTAGGCCTACGTGATATATTCCATTTAGCAATTTATGAGAgacttgttttctgttgttttaaatgtatttatatatcatatgtattattgtagCCTATATTtatcataacatttaattttaaatgttattgttttatggaGAATTTATAGAAAACTAATAttgtctttaattgttttacgGACAAACTCGCAGTAAGGCGCATGTGCAGAGCATTGGTAAGACTAAACCTGAGCATAATAACTTGTAATGTAATCTAACGCATTGAGCCGCTTTTCTGCCATGTCCAATGAGAGTATTACGtgctgaattttttttttttaacgaatACGATAAACCAGTCTTTTTGAAACAAATAAGTTCAATATTTGTCAAAGGCCAAAGCTCCAGACATCAAAATGctgtctataaatatttgtatcgagatcaaaacaaataaatcaaaacataacgCTACTTCAACCTTTCatgataactttttttttcaccttgAACGGGAGCGGCGCCGTGGCTTAGTTGGTTAAAGCGCCTGTCTAGTAAACAGGAGATCCTGGGTTCGAATCCCAGCGGTGccttttgtagttttgtttcatttttgtattagtatttaaaAGACGG

Function

GO: NA

KEGG:

id description
K24757 WDR88; WD repeat-containing protein 88

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU81188 lncRNA downstream 57782 28996392 ~ 29001633 (-) True G64912
TU81189 lncRNA downstream 59883 28996392 ~ 28999532 (-) False G64912
TU81187 lncRNA downstream 59883 28996417 ~ 28999532 (-) False G64912
TU81159 lncRNA downstream 201061 28857989 ~ 28858354 (-) True G64886
TU81115 lncRNA downstream 736251 28316769 ~ 28323164 (-) True G64847
TU81290 lncRNA upstream 188461 29259557 ~ 29314059 (-) True G64991
TU81330 lncRNA upstream 814505 29885601 ~ 29885899 (-) True G65023
TU81342 lncRNA upstream 912017 29983113 ~ 29983365 (-) True G65033
TU81344 lncRNA upstream 1055593 30126689 ~ 30390868 (-) True G65035
TU81361 lncRNA upstream 1464196 30535292 ~ 30535896 (-) True G65050
AMCG00020672 mRNA downstream 46120 29001771 ~ 29013295 (-) True AMCG00020672
AMCG00020669 mRNA downstream 254741 28804201 ~ 28804674 (-) True AMCG00020669
AMCG00020666 mRNA downstream 571544 28481482 ~ 28487871 (-) True AMCG00020666
AMCG00020664 mRNA downstream 609054 28431779 ~ 28450361 (-) True AMCG00020664
AMCG00020662 mRNA downstream 717238 28328985 ~ 28342177 (-) True AMCG00020662
AMCG00020676 mRNA upstream 1210 29072306 ~ 29096123 (-) True AMCG00020676
AMCG00020675 mRNA upstream 64233 29135329 ~ 29140819 (-) True AMCG00020675
AMCG00020678 mRNA upstream 149584 29220680 ~ 29221402 (-) True AMCG00020678
AMCG00020681 mRNA upstream 265608 29336704 ~ 29368396 (-) True AMCG00020681
AMCG00020682 mRNA upstream 347720 29418816 ~ 29457651 (-) True AMCG00020682
TU81155 other downstream 262459 28788580 ~ 28796956 (-) True G64882
TU81116 other downstream 731103 28325307 ~ 28328312 (-) False AMCG00020661
TU81066 other downstream 829768 28226535 ~ 28229647 (-) True G64811
TU80934 other downstream 1809739 27246014 ~ 27249676 (-) True AMCG00020639
TU80657 other downstream 3153804 25898428 ~ 25905611 (-) True G64470
TU81300 other upstream 310219 29381315 ~ 29405636 (-) True G65000
TU81316 other upstream 458823 29529919 ~ 29533117 (-) False AMCG00020685
TU81356 other upstream 1451890 30522986 ~ 30531136 (-) True AMCG00020694
TU81423 other upstream 1732138 30803234 ~ 30808846 (-) False AMCG00020702
TU81960 other upstream 3290139 32361235 ~ 32365142 (-) True G65549

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00069213 False 1695 lncRNA 0.40 1 NC_007118.7 26297716 ~ 26299410 (-)
grasscarp (Ctenopharyngodon idella) CI01000304_10167646_10169639.mRNA True 2265 mRNA 0.40 3 CI01000304 10166187 ~ 10169639 (-)
rainbow trout (Oncorhynchus mykiss) trnat-agu-153 True 74 mRNA 0.53 1 NC_048593.1 28591552 ~ 28591625 (+)
eurasian perch (Perca fluviatilis) unassigned_transcript_947 True 74 tRNA 0.57 1 NC_053127.1 17527235 ~ 17527308 (+)
tiger barb (Puntius tetrazona) TU155007 True 332 lncRNA 0.50 1 NC_056713.1 9393877 ~ 9394208 (-)
tiger barb (Puntius tetrazona) unassigned_transcript_947 True 73 tRNA 0.51 1 NC_056702.1 27134799 ~ 27134871 (+)
mexican tetra (Astyanax mexicanus) trnat-agu_46 True 74 tRNA 0.57 1 NW_019172925.1 729125 ~ 729198 (+)