RNA id: AMCG00020778


Basic Information

Item Value
RNA id AMCG00020778
length 768
RNA type mRNA
GC content 0.63
exon number 3
gene id AMCG00020778
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 32642924 ~ 32644550 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGCAGCTGCCCACAGACTGGTGATCGTGCGCCACGGGGAGAGCTCCTGGAACCAGGAGAACCGCTTCTGCGGCTGGTTCGACGCCGACCTGAGCGAGAAGGGCCTGGAGGAGGCCAAGAGGGGTGCGCAGGCTCTGAAAGACGCCGGCTACAAGTTCGACATCTGCTTCACCTCCGTGCTGAAGCGGGCCATCCGCACGCTGTGGACCATCATGGAGGGCACCGACCAGATGTGGCTGCCCGTGATCCGCAGCTGGCGCCTTAACGAGCGGCACTATGGCGGGCTGACAGGCCTCAACAAGGCGGAGACAGCGGCCAAGCACGGCGAGGAGCAGGTGAAGATCTGGAGGCGCTCTTTCGACATCCCTCCCCCGCCCATGGACCAGGAGCACCCCTTCCACCAGATCATCAGCATGTCGAGGCGCTACGCTGGGCTGAAGCCGGGTGAGCTGCCCACCTGCGAGAGCCTGAAGGACACCATTGCGCGGGCCCTGCCCTTCTGGGACGAGGCCATCGTGCCCCAGATCAAGGCTGGCAAGAACGTCCTCATTGCCGCCCACGGCAACAGTCTCCGTGGCATTGTCAAACACCTGGAGGGCATGTCGGACGCTGCAATCATGGAGCTGAACCTGCCCACTGGTATCCCCATCCTGTACGAGCTGGACAAGGACCTGAAGCCCATCAAACCCATGCAGTTCCTGGGAGACCCTGAGACCGTGAAGAAAGCCATGGAGGCTGTGGCTGCCCAGGGCAAGGTCAAGAAAtaa

Function

GO:

id name namespace
GO:0006096 glycolytic process biological_process
GO:0004619 phosphoglycerate mutase activity molecular_function

KEGG:

id description
K01834 PGAM, gpmA; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU82055 lncRNA downstream 84060 32557565 ~ 32558864 (-) False AMCG00020767
TU82054 lncRNA downstream 86367 32554860 ~ 32556557 (-) True AMCG00020767
TU81987 lncRNA downstream 127307 32515403 ~ 32515617 (-) True G65571
TU81961 lncRNA downstream 277782 32358238 ~ 32365142 (-) False G65549
TU81873 lncRNA downstream 427167 32212727 ~ 32215757 (-) True G65468
TU82209 lncRNA upstream 629626 33274176 ~ 33274444 (-) True G65753
TU82240 lncRNA upstream 1161151 33805701 ~ 33852626 (-) True G65776
TU82248 lncRNA upstream 1187185 33831735 ~ 33835514 (-) True G65783
TU82241 lncRNA upstream 1193697 33838247 ~ 33852626 (-) False G65776
TU82287 lncRNA upstream 1316627 33961177 ~ 33962191 (-) True G65813
AMCG00020779 mRNA downstream 2689 32630067 ~ 32640235 (-) True AMCG00020779
AMCG00020781 mRNA downstream 18330 32619774 ~ 32624594 (-) True AMCG00020781
AMCG00020776 mRNA downstream 28967 32611491 ~ 32613957 (-) True AMCG00020776
AMCG00020774 mRNA downstream 32216 32608849 ~ 32610708 (-) False AMCG00020774
AMCG00020780 mRNA downstream 42281 32598977 ~ 32600643 (-) True AMCG00020780
AMCG00020773 mRNA upstream 24361 32668911 ~ 32674378 (-) True AMCG00020773
AMCG00020784 mRNA upstream 54649 32699199 ~ 32703449 (-) True AMCG00020784
AMCG00020785 mRNA upstream 102196 32746746 ~ 32748272 (-) True AMCG00020785
AMCG00020787 mRNA upstream 181105 32825655 ~ 32826629 (-) True AMCG00020787
AMCG00020788 mRNA upstream 317991 32962541 ~ 32980525 (-) True AMCG00020788
TU82051 other downstream 32229 32607862 ~ 32610695 (-) True AMCG00020774
TU81960 other downstream 277782 32361235 ~ 32365142 (-) True G65549
TU81423 other downstream 1834078 30803234 ~ 30808846 (-) False AMCG00020702
TU81356 other downstream 2111788 30522986 ~ 30531136 (-) True AMCG00020694
TU81316 other downstream 3109807 29529919 ~ 29533117 (-) False AMCG00020685
TU82083 other upstream 10584 32655134 ~ 32657019 (-) True G65641
TU82127 other upstream 241814 32886364 ~ 32891493 (-) True G65679
TU82216 other upstream 724075 33368625 ~ 33369105 (-) True G65756
TU82397 other upstream 1577765 34222315 ~ 34239697 (-) False AMCG00020810
TU82568 other upstream 2164224 34808774 ~ 34814169 (-) False AMCG00020836

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00038429 True 1019 mRNA 0.50 3 NC_007132.7 19001677 ~ 19006631 (-)
grasscarp (Ctenopharyngodon idella) TU51557 True 66 TUCP 0.49 1 CI01000006 8198844 ~ 8198909 (+)
mexican tetra (Astyanax mexicanus) TU51557 True 1198 lncRNA 0.53 9 NC_035900.1 21264937 ~ 21279439 (-)