RNA id: AMCG00020790


Basic Information

Item Value
RNA id AMCG00020790
length 2744
RNA type mRNA
GC content 0.46
exon number 7
gene id AMCG00020790
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 33146461 ~ 33156561 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTCACGGCGGTCGTCCactctgtgtttcaggatggCAGCAGCGCAGGACAGAAGAAACCCGGATCTGTGTTTCAGGACAGTGCTGGGGGTGCTTTTCGCCGTCTACCTGAGCACAGGTGTCACTGTGGCAATGCAGATCACTTCCTATGGTCCTCAGACCATTCAGAAGGCGCAGGGGGAGCAGGTGACGCTGGGATGCACGTACACCCCCGCCGCCTCAGATGTGGGACCGATGGATATTGAATGGTTCAGCCTCAGCCCGGACATGACCCAGAAAGACACTCTGATCTTATCCTACATTGAGGGCCAGAACTCCAATTACACCATCCCAAGTCTGGCGAACAGGCTGGTCTTCACGGCCAGGGACCCCAGCCAAGGCGATGCATCCATCACCCTGTCAAACTTGGGGGCCTCGGACACCGGCACCTACCAGTGCAAAGTGAAGAAGGGTCTCGGCAATGACATGCGCAAAATCACGCTGGTGGTGATGGCACCCCCTTCCGTGCCCAAGTGCTGGGTTGAGGgtaaggaggaggagggggcgcCCGTCTCAATGCGCTGCAAGTCTTACTATGGCTCCACCCCTCTCAGCTACAGCTGGTTCAGGGAGAGCGGGGGGAGTATTCCCCCTGTTGCTGTACAAAATCCTCAGACCGGCGAGATGCTGATCAAGAATCACTCGCAGAGTTACGTGGGCAACTATCGCTGTGAGGCCTCGAATGCGGTGGGCAAGCAGCAGTGCATCTACACACTGCGGGCCTACACACctgTCAACAGAGCTGGAATGATTGCAGGTGCTGTGATTGGTGCTCTGCTCCTGGAGGACGCCCCACCCCCTGCGAGCCGCCCCGTCACGCCCAACTCCAGCTTCCGCTCCGTCCTCGGGTACCGCTCGCACGCCGGCCTCAACTACAACTTCGTGGGCGGCCGGCATTCGCGGCCCGGGTCCTCCGTCCGCAGCAGCATCTACACAGAGAAGAAGGGCCAAATGGCACGGCAACCGTCCTCTTACAGCCAGCCCAGCGTGGTCAGCGGGGTCCCCTCCGCAAAGTACTCCAGCAAGTACGGGTACCCGGTATGAGCGCAGCCGACTGCCAACTCTGGTGGGTGGGGGACGTGGGGGGGAGAGGTGACACAGGAATTACAATGCTGTACGTGTAAAGCTAACCCCTTACCGGTGATGGAGAACTACAGGCTACTAATTGGAGTGGGATgacaggactggactggactggatggTGCAATATTCCTTTTCTGCTGTTTGGGAAgacataaaaatagaaagttCAAATGCCATCAGATTGCTGTTTACAGAAGAGAGTGGAGAGAACATGTTTGTGTCTGAGGAGATCTAATTtccatatttgtatatatgtatatatcaatatatttgtgCACTTATCTACTGTTTTCTATACTATATATTCGCATTTGTGTTCACATACACTATATTACCAAAAGTATTGGGACCACCAAATCAAATTGGCAATCCATTTAAGAGTTTGTAGGTGGGAAAGTGTGTATATCCTCCACTCAGGGCCGTGAGAAAAAGGCACCACCATTATATTCACCCAGTCTGACCTCAACATACAATCCCACCAATGCTGGCAGAAACTGTGTTATATAAACATGCCAAAGCATAGTGGTTATCAGGGAGCCCTTCGTATAAACCTCAGGCTCTCCACAGCACCGCACAGAGGGGCTGCTTGTGCGAATACTGCTGGTAATATAGTGTATCTGAAAGAGATATTTACAAGGACTGGAGTCCCTTCTATAAGCATTCTATTAGAAACAACATGTCAAACTGAAGCAACAGACAGCACATGTTTGTACACTTCACAGTGAATTGATTGGAACCCTAATTACCAAGAAGGAGGGTTAGTTCAACTTAATTCAATCATGTTGACTGTGTTGTATATCGTATTCTCTCCGTGTCAAGCAATCTGATGTCTTTGTGTTAAAAGGCATTCATAATGTTTCTCATCACGTCAAAGTGAGCTTTCATACGCTGGTGTGTCTGCTGCAGTTTTTTCATTTCCAGTTCACTGAGCACTAGGCATTATTAAATATCTGCTGCCCCctacagaaatgaaaaagtactgtacatttaacaCACTCTGTTTTGTATTGGCCGGGGATTCAAATTCATCTGCTGCTGAAAAACCTAATAATGACCTCCAGGTGTCAGActagaataaacaaaaaatctagaaaaatgtaatgaataaaataatgtatactgtCTCAGGAGAAATACTTGTGTAAATGTAATTCAACCTTGAAAACAAATTGATGAAACTCTTAATATGTATGGATCAAGTATcaagagaaatatataaaaatggtaCCTTCTCATTCATTTGTGTACGGGTAGGAAaagtgctgtttgttttaataagagTTTGGTTCTATTGTTCAAGCTGCAAACCTCAGGTCACACAGTATAATCTAGAGTCAGCAGCAGACATTgcctgtgcattttattttagtccCTGGCAACCTGATTATTGtgtacttttatatatttttctattataatGTCTAAAAGGAAATCCTTGTAGTTTAGATGTtaacactgtaacactgtaagTACCACGATGATGTAAACTGGGATGacatatatgcatttgtataaCTGTATTGtgtacataatttattatttttgttcgcTGTTAAATGCtctatactttttaaaatatgttttatctATATTTGAATAGTAAAAAATTCAATTATTGTCTTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU82055 lncRNA downstream 587597 32557565 ~ 32558864 (-) False AMCG00020767
TU82054 lncRNA downstream 589904 32554860 ~ 32556557 (-) True AMCG00020767
TU81987 lncRNA downstream 630844 32515403 ~ 32515617 (-) True G65571
TU81961 lncRNA downstream 781319 32358238 ~ 32365142 (-) False G65549
TU81873 lncRNA downstream 930704 32212727 ~ 32215757 (-) True G65468
TU82209 lncRNA upstream 117615 33274176 ~ 33274444 (-) True G65753
TU82240 lncRNA upstream 649140 33805701 ~ 33852626 (-) True G65776
TU82248 lncRNA upstream 675174 33831735 ~ 33835514 (-) True G65783
TU82241 lncRNA upstream 681686 33838247 ~ 33852626 (-) False G65776
TU82287 lncRNA upstream 804616 33961177 ~ 33962191 (-) True G65813
AMCG00020788 mRNA downstream 165936 32962541 ~ 32980525 (-) True AMCG00020788
AMCG00020787 mRNA downstream 319832 32825655 ~ 32826629 (-) True AMCG00020787
AMCG00020785 mRNA downstream 398189 32746746 ~ 32748272 (-) True AMCG00020785
AMCG00020784 mRNA downstream 443012 32699199 ~ 32703449 (-) True AMCG00020784
AMCG00020773 mRNA downstream 472083 32668911 ~ 32674378 (-) True AMCG00020773
AMCG00020792 mRNA upstream 41071 33197632 ~ 33207776 (-) True AMCG00020792
AMCG00020798 mRNA upstream 759020 33915581 ~ 33923435 (-) True AMCG00020798
AMCG00020804 mRNA upstream 836248 33992809 ~ 33995725 (-) True AMCG00020804
AMCG00020805 mRNA upstream 866458 34023019 ~ 34027562 (-) True AMCG00020805
AMCG00020803 mRNA upstream 900393 34056954 ~ 34075604 (-) True AMCG00020803
TU82127 other downstream 254968 32886364 ~ 32891493 (-) True G65679
TU82083 other downstream 489442 32655134 ~ 32657019 (-) True G65641
TU82051 other downstream 535766 32607862 ~ 32610695 (-) True AMCG00020774
TU81960 other downstream 781319 32361235 ~ 32365142 (-) True G65549
TU81423 other downstream 2337615 30803234 ~ 30808846 (-) False AMCG00020702
TU82216 other upstream 212064 33368625 ~ 33369105 (-) True G65756
TU82397 other upstream 1065754 34222315 ~ 34239697 (-) False AMCG00020810
TU82568 other upstream 1652213 34808774 ~ 34814169 (-) False AMCG00020836
TU82585 other upstream 1706058 34862619 ~ 34865305 (-) True G66054
TU82718 other upstream 1993007 35149568 ~ 35170179 (-) False AMCG00020853

Expression Profile