RNA id: AMCG00020792


Basic Information

Item Value
RNA id AMCG00020792
length 1692
RNA type mRNA
GC content 0.59
exon number 3
gene id AMCG00020792
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 33197632 ~ 33207776 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGTCACTTAAGGGGGACGAAGACTTCCTTGTTGTCTGGGGGTCTCGTGTTTTCGATGGCCGATTAGCCTTCTCCTTCCTCCAGGCTCTGCTGCTTGTGTTGCACTGCAGGGGTCAGAGGTTGTGCCCTCCAACCTGCCGCTGCGAAGGCAAGATCGTTTACTGCGAGTCGGGAGCCTTCCACGACGTGCCGGACAATGTGTCTGCAGGCTGCCAGGGCCTGTCCCTGCGCTACAACAACATGCAGCGCCTCTACTCCTCCCAGTTCTCCCACCTCAACCAGCTCATCTGGCTCTACCTGGACCACAACTACATCAACAGCGTGGACAGCGACGCCTTCCGGGGCGTCCGGCGGCTGAAGGAGCTGATCCTGAGCTCCAACAAGATCGTGCAGCTCCACAACACCACCTTCCACACCGTGCCCAACCTGCGCAACCTGGACCTGTCCTACAACAAGCTACAGGCGCTGCAGCCCGGGCAGTTCCAGGGCCTGCGCAAACTGCTCAGCCTCCACCTGCGCTCCAACTCTCTCAAGAGTGTCCCCATTAGGGTCTTCCAGGAGTGCCGAAGCCTGGAGTTCCTAGACCTGGGCTACAACCGTCTGCGCAGCCTGACTCGCACCACGTTCTTGGGGCTGCTGAAGCTGACTGAGCTGCACTTGGAGCACAACCAGTTCTCCAAGATCAACTTCTTCCTCTTCCCGCGCCTCGCCAACCTGCGGGCGCTGTACCTGCAGTGGAACCGTATTCGCTCCATCAGTCAGGGGCTCTCCTGGACCTGGACCTCCCTGCAGAAGCTGGACCTCTCGGGCAATGAAATCCAAGCCTTAGACACAGTTGTCTTCCAGTGCCTGCCCAACCTGCAGACGCTCAACCTGGAATCTAACAAGCTCAGCAACGTCTCCCAGGATGCGGTCTCTGCCTGGATCTCGCTGACCACCATCAGCCTGGCGGGCAACGTGTGGGACTGCAGCCCCAGCATCTGCCCCCTGGTGGCCTGGCTGAGGAGCTTTAAAGGCACCAAGGACACCACCATGATCTGTACCAGCCCCAAGCCACTACAGGGGGAGAAGGTGATGGAAGCAGTGAGAAACTACAGCATCTGCAGAGAGCCTCTCACCCTGGTTCCCACTCTTCCtccaaccaccaccaccaccacaatggCCACAACCACAACAAGGAGAAGCCCTCCTCCCACTTCCCAGGCACCGGCCAGGCCCAGGTTCCTGCCCCACCCGACCACTCCCAGACTGGGGAAGGCAGACTCTCACGATGCCGTGCCAACAGCGCCCCGCCCCAGCGTCCTCTCCTTCACCCCCGAGCCGGAGTTCGAGCACATGTCCTTCCACAAGATCATCGCGGGCAGCGTGGCGCTCTTCCTGTCAGTAGCCTTGATCCTGCTGGTGATCTACGTCTCGTGGAAACGCTACCCGAACACCATGcggcagctgcagcagcactcCATGGGCCGCAAGCGCAGGAAAAAGGCACAGGAGACTGAGCACAACCTTACCCCTCAGTTGCAGGAGTATTATATGAACTACAATCCCACAAACTCTGAGACCATGGACGTGCTGGTCAATGGTACGGGGCCCTGCACCTGCACTATCTCTGGCTCCAGGGAATGCGAGTGCTGCGGGGACTCCTACACCAAGACTGCCAAGGgaaaaagcaagcaagcaaacgAAACGTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU82055 lncRNA downstream 638768 32557565 ~ 32558864 (-) False AMCG00020767
TU82054 lncRNA downstream 641075 32554860 ~ 32556557 (-) True AMCG00020767
TU81987 lncRNA downstream 682015 32515403 ~ 32515617 (-) True G65571
TU81961 lncRNA downstream 832490 32358238 ~ 32365142 (-) False G65549
TU81873 lncRNA downstream 981875 32212727 ~ 32215757 (-) True G65468
TU82209 lncRNA upstream 66400 33274176 ~ 33274444 (-) True G65753
TU82240 lncRNA upstream 597925 33805701 ~ 33852626 (-) True G65776
TU82248 lncRNA upstream 623959 33831735 ~ 33835514 (-) True G65783
TU82241 lncRNA upstream 630471 33838247 ~ 33852626 (-) False G65776
TU82287 lncRNA upstream 753401 33961177 ~ 33962191 (-) True G65813
AMCG00020790 mRNA downstream 41071 33146461 ~ 33156561 (-) True AMCG00020790
AMCG00020788 mRNA downstream 217107 32962541 ~ 32980525 (-) True AMCG00020788
AMCG00020787 mRNA downstream 371003 32825655 ~ 32826629 (-) True AMCG00020787
AMCG00020785 mRNA downstream 449360 32746746 ~ 32748272 (-) True AMCG00020785
AMCG00020784 mRNA downstream 494183 32699199 ~ 32703449 (-) True AMCG00020784
AMCG00020798 mRNA upstream 707805 33915581 ~ 33923435 (-) True AMCG00020798
AMCG00020804 mRNA upstream 785033 33992809 ~ 33995725 (-) True AMCG00020804
AMCG00020805 mRNA upstream 815243 34023019 ~ 34027562 (-) True AMCG00020805
AMCG00020803 mRNA upstream 849178 34056954 ~ 34075604 (-) True AMCG00020803
AMCG00020807 mRNA upstream 904867 34112643 ~ 34113689 (-) True AMCG00020807
TU82127 other downstream 306139 32886364 ~ 32891493 (-) True G65679
TU82083 other downstream 540613 32655134 ~ 32657019 (-) True G65641
TU82051 other downstream 586937 32607862 ~ 32610695 (-) True AMCG00020774
TU81960 other downstream 832490 32361235 ~ 32365142 (-) True G65549
TU81423 other downstream 2388786 30803234 ~ 30808846 (-) False AMCG00020702
TU82216 other upstream 160849 33368625 ~ 33369105 (-) True G65756
TU82397 other upstream 1014539 34222315 ~ 34239697 (-) False AMCG00020810
TU82568 other upstream 1600998 34808774 ~ 34814169 (-) False AMCG00020836
TU82585 other upstream 1654843 34862619 ~ 34865305 (-) True G66054
TU82718 other upstream 1941792 35149568 ~ 35170179 (-) False AMCG00020853

Expression Profile