RNA id: AMCG00020798


Basic Information

Item Value
RNA id AMCG00020798
length 1485
RNA type mRNA
GC content 0.65
exon number 2
gene id AMCG00020798
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 33915581 ~ 33923435 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGTGCCACTGGGGGAGAACATGACGCCCGAGTCCCTGCCTCAGAACTGCAGCAACTGCACCCAGGCCCCCGGGGGCAGCCCGAGCCTGGATCTGACCAAGGCAGTGGCGCTGGGGCTGGTGCTGGGGCTTCTCATCCTGTTTGGCATCCTGGGCAACATCCTGGTCATCCTGTCGGTGGCGTGTCACCGGAACCTGCAGACGGTCACGCACTACTTCATCGTCAACCTGGCGGTGGCCGACCTACTGCTGACCTCCACGGTGCTGCCCTTCTCGGCCATCTTCGAGATCCTGGGTCACTGGGTGTTCGGCCGTGTCTTCTGCAACATCTGGGCGGCCGTGGACGTGCTGTGCTGCACCGCCTCCATCATGAGCCTGTGCGTGATCTCGGTGGACCGCTACGTGGGCGTGAGCTACCCGCTGCGCTACCCGGCCCTGATGACGGAGAAGCGTGCCGTGTTGGCGCTGCTGGGGCTGTGGGCGCTCTCCATCACCATCTCCATCGGGCCGCTGTTCGGCTGGAAGGAGCCGGCGCCAGAGGACGAGACGGTGTGCAAGATCACTGAGGAGCCGGGCTACGCCATCTTCTCCGCCGTGGGCTCCTTCTACCTCCCGCTTGCCGTAATCCTAGCCATGTACTGCCGCGTATATGTGGTGGCGCGGCGCGAGACCAAGAGCCTGCGGGAAGGGATGAAGACCGACAAGTCCGACGCCGAGGGGGTGACCCTGCGCATGCATCGCGGGAACTGCCCCTCCCacgccaccccccccaccaccaactCCGGTCACACCAACGCAGCCGGCAGCGAGGAGGAGGCCCTGCACGGACGCCTGCACTTCTCCATGCGGCTGCTCAAGTTCTCCCATGAGAAGAAGGCCGCCAAGACGCTGGGCATCGTGGTGGGCTGCTTTGTGCTGTGCTGGCTGCCGTTCTTCCTGGTGATGCCCATTGGCTCCATTTTCCCTGCCTACCGCCCGTCAGACACCGTGTTCAAGATCACCTTCTGGCTGGGCTACTTCAACAGCTGCATGAACCCCATCATCTACCCCTGCTCCAGCCAGGAGTTTAAGAAGGCCTTCCAGAACGTACTGAGGGTGCAGTGCCTGAAACGGAAAGCCGGCCAGACCTGCAAGTCGCACTCCCTGACGCCGGGGCACAGGCAGCACCCTGGGGGCCTGGAGCTTGGAGGGCGAGGGGATCTGGGACGCAGCCCATCGGCAACCCCGGTGCTGACCCGTGGCGGAGGGGGCGGTGGCGGGGAGCGGGGACTGTATGCAGGAGCATCCACGCTGCTCCCCCCGCCCACTCTCCACAGCTGCCGCGCTGAGGCTGCCCGAGTGTGCAGCAAGAGTCTGCTGAGGGCGTGCTGCTGTGTCGCCAACGGAGAGCCGACGCAGTTCCCCGTGCCACCGCTGCCCTCACCATCCGCGCCCGTCTTCAAGGTGCACAAGCTGTCGCTGTGCCACAATGGAGAGGCTGTTTAA

Function

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0016020 membrane cellular_component
GO:0004930 G protein-coupled receptor activity molecular_function

KEGG:

id description
K04135 ADRA1A; adrenergic receptor alpha-1A

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU82240 lncRNA downstream 62955 33805701 ~ 33852626 (-) True G65776
TU82241 lncRNA downstream 62955 33838247 ~ 33852626 (-) False G65776
TU82248 lncRNA downstream 80067 33831735 ~ 33835514 (-) True G65783
TU82209 lncRNA downstream 641137 33274176 ~ 33274444 (-) True G65753
TU82055 lncRNA downstream 1356717 32557565 ~ 32558864 (-) False AMCG00020767
TU82287 lncRNA upstream 37742 33961177 ~ 33962191 (-) True G65813
TU82289 lncRNA upstream 58355 33981790 ~ 33982026 (-) True G65815
TU82324 lncRNA upstream 126561 34049996 ~ 34051069 (-) True G65844
TU82325 lncRNA upstream 129025 34052460 ~ 34053108 (-) True G65845
TU82340 lncRNA upstream 193171 34116606 ~ 34116943 (-) True G65858
AMCG00020792 mRNA downstream 707805 33197632 ~ 33207776 (-) True AMCG00020792
AMCG00020790 mRNA downstream 759020 33146461 ~ 33156561 (-) True AMCG00020790
AMCG00020788 mRNA downstream 935056 32962541 ~ 32980525 (-) True AMCG00020788
AMCG00020787 mRNA downstream 1088952 32825655 ~ 32826629 (-) True AMCG00020787
AMCG00020785 mRNA downstream 1167309 32746746 ~ 32748272 (-) True AMCG00020785
AMCG00020804 mRNA upstream 69374 33992809 ~ 33995725 (-) True AMCG00020804
AMCG00020805 mRNA upstream 99584 34023019 ~ 34027562 (-) True AMCG00020805
AMCG00020803 mRNA upstream 133519 34056954 ~ 34075604 (-) True AMCG00020803
AMCG00020807 mRNA upstream 189208 34112643 ~ 34113689 (-) True AMCG00020807
AMCG00020811 mRNA upstream 285474 34208909 ~ 34211086 (-) True AMCG00020811
TU82216 other downstream 546476 33368625 ~ 33369105 (-) True G65756
TU82127 other downstream 1024088 32886364 ~ 32891493 (-) True G65679
TU82083 other downstream 1258562 32655134 ~ 32657019 (-) True G65641
TU82051 other downstream 1304886 32607862 ~ 32610695 (-) True AMCG00020774
TU81960 other downstream 1550439 32361235 ~ 32365142 (-) True G65549
TU82397 other upstream 298880 34222315 ~ 34239697 (-) False AMCG00020810
TU82568 other upstream 885339 34808774 ~ 34814169 (-) False AMCG00020836
TU82585 other upstream 939184 34862619 ~ 34865305 (-) True G66054
TU82718 other upstream 1226133 35149568 ~ 35170179 (-) False AMCG00020853
TU82719 other upstream 1239379 35162814 ~ 35170179 (-) True AMCG00020853

Expression Profile