RNA id: AMCG00020803


Basic Information

Item Value
RNA id AMCG00020803
length 5676
RNA type mRNA
GC content 0.65
exon number 10
gene id AMCG00020803
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 34056954 ~ 34075604 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AAGAGTGTGGTGCTGTGCAGTAGGGTGGTCAAATGCCTGAACCTGTCccctcatcctctctctctctctctctctctctctgtgcagtcaGGTTCCGGTCTGGGTTCAGTGGATGGCCCCAGAAGAGACCCAATGGAAGTTGGGTCACATGACCGTGCAGCGGAGCGGGGCCTGAGTCCCAGCCCGGTGAATGGAGTGAGCGGACGGCccgatgaggaggaggaggagggaggcagCGAAGGGCAGGAGGAGGGGCCAGCCAGCTGCCCCCTGTTTTCTGAGGGCACTGAGCAGGACTGGGCAGTGGAGGGCAACAGGAAAGTTTCTACCCCCATCCTGCTGGAGGAGCAGCACAGCCCGACCAACGCGTGCTGGGACCGCCCCCGCCCAACGTGTACCGTGGACCCCACTTCCCCTGCCACTCACACGGGTTCAGCCCACAACGGCGTGGACATGGAAGATGCCAGGAACTTAGTGGCCTTCTCTGCCACAGCACTCTCCATGCCACCCCCCTACAATGCCAGGGCCCCCACGCCTGAGCTGCGGACCATGCAGCTGTACGAGAGGTTCAACCAGGAGATGGGTGCGGGCAACGGGGGCATCCCGGAGCAGAAGGCCGTGGGCAGGGTAGCCGCGGACAGATGCACTGAGGACCTAAGCACTCTGCAGGCCGCGCTCAGCCTGGCCCGGCACGGGAAGAAGCCGCCCAACTGCAACTGCGATGGTCCTGAGTGCCCTGACTACCTGGAGTGGCTGGAGAAGAAGATCCAGATGGCTGTGGGTGACGATCGACCCTGTGGCGGTCTGCAGGCTGATCCCCAATCTCCTCAGCCCGTGAGCGTAGCCACGCAGGGTCCCCCGCCCCTCTCTGCTTCCACTCCTGCCCCCCCCAACGCCACAGACACGGGGCCACCGTGCGCCCTCACCGACGACCCCCTACCATACTCCCCCAGCGTCCTCTCCATCGCCAAGGAGAAGAACATCAGCCCTCAGACGGCCATGGTGATCGAAGCCCTCACCGAGCTGTCCTCCACTGTGCCACAGGCCATGGTGCCTCCCAGGGAGTCCTCCTCCGCCAACCACCCCCACCATCATCACCCGCACCATGGCAACGGTCTCATGCGGTCTTCTCCAGGCCCCGCCTCCAGCTCGTTCTGCGGCTCCAGAGACCAGCCCTCTGCGCCACAGCCCCCCACAGGTTCCGTCCCTCTCGTGCACTTTGACCCCATCAATCGTCAGCCACACCCACACCACCATCCCCACCTCTTCCCCAGCACCTCCGCCCAGCCTGGGCCCCCATCCTGGGAGCCCCACATAGCACAGCCCCCACTGCAGCCCAACGCCTGTATtgctactgctgctactgcCGCCAGCATCACCAGCCAGCGCCTCCGGGATTCCCCGCACCCCGCTGCCTCCCCCTATGCCCGTCATAGCCCCAACCCCAGCGCCAGctccagccccagccccagcccccgCCCCCCTTCAGGGAGCCCCCTGGTTCAGTGGCACAGCGGCTGCGGTAGCGGGAGTCTCGAGAAAGCCCGGAAAGTGGCCAACCCTTGGATGACTCTTGGCTCCCAGCAGCCCCAATTCCCCTCCGCCTGTGACCCCATGTTTTACGGGATGGCTAATGGGCAGCAGCCGCAGCCACAGCCCCCGTCGCTCCTGCCGCCGTCGGGGCGCCCCCTGTCGCCGGGCAGCGCCATCCACCACACGACACAGGCGGCGCTGCAGCAGCACCTGCACCACAAGCGCAGCCTCTTCCAGGAGCAGGGAGGCCCTCAGGACCTCAGGAAATGGTGGCCTGCGCCACCGCTGGGGAAGCCAGAGCCCAAGGAGCcgaaaaagagaaagaacagCCAGACCTCCCCGTCTgcgaagcagcagcagcagctcctccttGCGGGACACCCCACCATGCCCCTGCTGCCCCCACCACCCAAGCCCAAGCAGATCGTCATCAAGAAGCCCAAACAGAAAGCCTCTCTGCCCACGTTCCTCCCGCAGCACCAGATCACCGTGGAGAAACCGCGCAAGGCCGACATGAACGCCTCCTTCCCACCCCCGCTGGCAGGGTATCCAGGTCAGAGTATCCAGCACtgcctgacctctgaccctttctctctcccccgcTACCTGGACCGCCAGGCCTCGATGGGCAGCCTGCCTGCCAGCATCACTCAGGAATCGATTTCTAATAGTGCTAGTGCTTCTACTATGATTATGACTACTactgctcctgctgctcctgcGGCCGGCCTGGCTGTGCCCTCCTCTGGCCAGCCACCCCCCACGCAAAGTGGAAGTGGGAACAGCCCCACCCCCCAGCTGCCTTCCTGTGCCCCACAGCCCACCTCTACTCttatccccacccccacctcagCTCCTGTGTCCCAGTCCCCTGTGAGCTCCAGCAGCCTCCCTCTTGGCAGGGAAGGTGAGGTAGCTCAGGCCGCTACAGAGCCCAGCATCTTGCCCGCCGAGTCTtcaagcctctctctctcctctcagtctGGCTCGGGGTGCATCTCCAGCACTGCTCAGGGGCTGAGCCACCTGGACGACAAGCTAGAGGATCTGATCAGGCAGTTTGAGGCTGAGTTTGGGGACCCTGCAGCAGCCCCAGACAAGCCCCAGACCCCCGCCCCAGACCAGCCCCAGACCCCCACCCCAGACCAGCCCCAGACCCCCACCCCAGACCAGCCTCAGACCCCAGGCACAGACCAGGCTCCCGCTCTGGGACCTCAGCCTACCTTTAACTCAGGACAAGCCACCGATCCTGAAGACACTTCGGGTCCGGTTTCTGCTAAAGGTGCTTCGCAAACCCCCGCCAACGACCCCACCGTAGGGCAGCCCCGAGACAGGGAGGGGGACGTAGTGATGGAGACGGAGACCACAGGGGGAACGGCCCTTGGGCAGGAGAAGGAGCAGACGGAAGAACCAGGGCAGGAGCAGGGCAAGGGTGAGGGTGAGGCCAGGGCATTATCTCAAGAGGAGTCCCAGCCCGCCCAGCACCTCCGGGAGGccctcctccagcagcagcagcatagGCTCCTGGAGGACCCCTTCACCATCCCATTCTGCAGCCCGCAATCGCCGCCCAAGAGGGTGAAGATCGAGTCCTCGGGGGGCCTCACCGTGCTGTCCACCACCGCCTGCTTCTCCCCCGATGACGACACCCCCACCAAGAACGGGCCACCCCTCACGCCTTCCCTCAGCGGCTTCCTGGAGTACGGAGAGAAGGGCGAGGCAATCCGCATCGAGAAGGTGGTCTACACGGGCAAGGAAGGGAAGAGCTCTCAGGGATGCCCCATCGCCAAGTGGGTGATCCGGCGAGCCAGTGAGAAGGAGAAGCTGCTGTGCCTGGTGCGGCAGCGGGCCGGCCATCACTGCGCCAACGCTgtcatcatcatcctcatccTGGCCTGGGAGGGCGTGCCCAGGGCCCTGGGGGACAAGCTCCGCACCTGTGCCTGCCAGGGGAAAGACCCTGATACCTGTGGAGCTTCCTTCTCCTTCGGGTGCTCCTGGAGCATGTACTTCAACGGCTGCAAGGATAATTTCCAGGATCTGGCCACCAAGGTAGCTCCACTGTACAAGCGGCTGGCTCCACAGGCCTACACCAACCAGGACCAGCACAATCTATACAACGGCTGCACAGTGGTACGCACCCCCATCTCCCCATCTCCCCATCTCCCCTGCTCCCCTCCACCTCCGTGTGCTcgttgtgtgtgtggcagtgtctcagtgtggcTCGAGAGTCTGTATGTTTGCACGTTGACGAAGGAGGACAACCGCATGGTGGGGCAGATCCCGGAGGATGAGCAACTGCACGTGCTGCCCCTCTATAAGGTCTCCCTGACGGATGAGTTCGGCAGCGAGGAGCGGCAGCGGCAGAAGATGCAGAGTGGGGCGATCCAGGTGCTCAGTAACTTCCGGCGAGAGGTGCGCAAGCTGCCTGAGCCCGCCAAGTCCTGCCGGCAGCGCAAGCTGGAGGCCAAGAAAGCCGCCTCGGAGAAGAAGAAGGGCCAtaagcagcagctgcagcaggagaCGCCTGACAAGATTAGGGAGGCCAAGGATCCGTATCCGACGTTCAACGGGAGCACCAACGGTGTCCTGGAGAGCTACTCTGTCCTGGGCAACTGCCGGCCCTCCGATCCCTACAGCATGAACAGCGTTTACTCCTACCCTTCCTACTATGCAAGGACTGGCCCTGCCTCCCCCAACGGGTTTCACCCCAACCTCTCGCTGCCCGGGTACAACTACTACAACTACCCACCCAGCCACATCTTTCCCCCGCACTTCCTGGAAGGCCGCAACGGCACCTGGCCCAACGCTGCCAGCGCTTATGAGAAGAAGCCGGATGTCCAGATGCTGCAGGCCAGTCTGGCCTCGCAGTACCCCAAGCAGCCCTCCTTAGCAGGGGCCGCCCCCAAGCCCGGCTACCCCCTCCCGCCCTCGCTGTGCGGCTCACAGGAGTTCAACCAGCTGGACCCACTGTCCCATGGCTCCCAGCCCCCGGAGGTCAGGCATAGGAGCTTCTCTAGCCCCCTCACCAAGCTCATCAAGCAAGAGCCAGCGGATCACCCTGCCTATGGCGACTGTGGGGGGGGCAgccacccctccacccccacccccacccccatccccgcAGGAGACGGACCCCTCCCCCAGCACGAGGCCTGGCCCGGATACAGGATGAACGGCAACATGACGCCAGAGCCCTGGGATGGCAAAGCCAAGCTTCCCACCCCCACAGAGGGCAGGAGGATCTGGGGCTCCTCCCCCTCGCCCTGGGGTGGCTTCGGCAAGCCCGGGGACAGCTGCTGCCCGTCGTCTGGTGCTCAGAGTAGGGCCTGGAGCTGCCCCCCCCCAGGGTACAGCACCGGCCTGAAGAGGGCGGCCGCTCCAGCAGGGGGGTACCCAGACAAGCTGTGGTGCAAGGCCGGGGAAGGCCGGGGCTCGACGCCGCTTGGGCTGCAGGAGAAAGCCTGGAAGTCCTGTGGGGGCTCAGCGGCCACCAcgcccacccccacccccgtgCCCACACCGGAGGGCAGGCTGTACCCTGACGCCTTCCAGGAGGCCGAGGGCAAGGCTTTCTGGGACCCCTACGAGGAAGAGCGAGCGAGGCAGCGGgcgaaggaggaggaggaggtgtggTCGGACAGCGAACACAACTTCCTGGACCCCAACATCGGGGGGGTGGCGGTGGCGCCAGCGCACGGCTCTATCCTGATTGAGTGCGCCCGGCGCGAGCTGCACGCCACCACGCCGCTCAAGAAGCCCAACCGCTCGCACCCCACCCGCATCTCGCTGGTCTTCTACCAGCACAAGAACCTCAACCAGCCCTGCCATGGCCTGGCGCTGTGGGAGGCCAAGATGAAGGTGCTGGCAGAGCGGGCGCGGCAGCGGCAGGAGGAGGCAGCCCGGCTGGGGCTGACGCAGGAGGACATCAAGGCCTACGGCAAGAAGCGCAAGTGGGGGGCGGCGGGATCCGGTAACGGCACGGCGGCGGCAGGGGCCGGGCCGGGCAGCCAGGCCCAGGGCAGGGACAAGAAAGATGGCGTGAGCACGCGGCACGCTCCCACCGCACACACCACCTCCCTCGTCACCGTCTCCTCCTACGCGCACACCCAGCTCACCGGGCCCTACAGCCGCTGGGTGTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU82325 lncRNA downstream 3846 34052460 ~ 34053108 (-) True G65845
TU82324 lncRNA downstream 5885 34049996 ~ 34051069 (-) True G65844
TU82289 lncRNA downstream 74928 33981790 ~ 33982026 (-) True G65815
TU82287 lncRNA downstream 94763 33961177 ~ 33962191 (-) True G65813
TU82240 lncRNA downstream 204328 33805701 ~ 33852626 (-) True G65776
TU82340 lncRNA upstream 41002 34116606 ~ 34116943 (-) True G65858
TU82349 lncRNA upstream 139453 34215057 ~ 34215559 (-) True G65867
TU82355 lncRNA upstream 143155 34218759 ~ 34220010 (-) True G65872
TU82420 lncRNA upstream 341053 34416657 ~ 34420190 (-) True G65915
TU82465 lncRNA upstream 438764 34514368 ~ 34515898 (-) True G65957
AMCG00020805 mRNA downstream 29392 34023019 ~ 34027562 (-) True AMCG00020805
AMCG00020804 mRNA downstream 61229 33992809 ~ 33995725 (-) True AMCG00020804
AMCG00020798 mRNA downstream 133519 33915581 ~ 33923435 (-) True AMCG00020798
AMCG00020792 mRNA downstream 849178 33197632 ~ 33207776 (-) True AMCG00020792
AMCG00020790 mRNA downstream 900393 33146461 ~ 33156561 (-) True AMCG00020790
AMCG00020807 mRNA upstream 37039 34112643 ~ 34113689 (-) True AMCG00020807
AMCG00020811 mRNA upstream 133305 34208909 ~ 34211086 (-) True AMCG00020811
AMCG00020813 mRNA upstream 141292 34216896 ~ 34220680 (-) True AMCG00020813
AMCG00020810 mRNA upstream 146742 34222346 ~ 34230487 (-) True AMCG00020810
AMCG00020812 mRNA upstream 164285 34239889 ~ 34272166 (-) True AMCG00020812
TU82216 other downstream 687849 33368625 ~ 33369105 (-) True G65756
TU82127 other downstream 1165461 32886364 ~ 32891493 (-) True G65679
TU82083 other downstream 1399935 32655134 ~ 32657019 (-) True G65641
TU82051 other downstream 1446259 32607862 ~ 32610695 (-) True AMCG00020774
TU81960 other downstream 1691812 32361235 ~ 32365142 (-) True G65549
TU82397 other upstream 146711 34222315 ~ 34239697 (-) False AMCG00020810
TU82568 other upstream 733170 34808774 ~ 34814169 (-) False AMCG00020836
TU82585 other upstream 787015 34862619 ~ 34865305 (-) True G66054
TU82718 other upstream 1073964 35149568 ~ 35170179 (-) False AMCG00020853
TU82719 other upstream 1087210 35162814 ~ 35170179 (-) True AMCG00020853

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000071_03942074_03954201.mRNA True 5988 mRNA 0.51 10 CI01000071 3941975 ~ 3954240 (+)