RNA id: AMCG00020812


Basic Information

Item Value
RNA id AMCG00020812
length 5463
RNA type mRNA
GC content 0.53
exon number 26
gene id AMCG00020812
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 34239889 ~ 34272166 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGATCTATGACCGCACTGTCTTCATCTTTCTGCTGTTTCAATCCATGTGTGTTTTGCTCTGCCCCGCCTTTCCTGAAGACCACCACTCCATCTACATCGGCGTGCCCGTGCCGCGTGGTTACCGGCGGAAGCGGCGGCGCAGGAGGTCCACATCGAGCCGCGACAACGTGGAGGTCGAGCGGGGGAGACGCTACGAGCATGAGAGGCACGACCGCTCTGACACCGACGAGGGAGGGCTGGTGTCCCCAGCAGCCGAGCGCTTGCGCTACATCCTGGGCGAGGAAGACGACCTGCCCACCCCCACACTTCTGTTTGAGCTGCGCACCTGTCTGCAGACCGGCACCATCCTGCTGGACCTGGACGGGTACTCGCTGCCGCAGATAGTGGACGATATAATCGAGCGCCAGGTGGAGGAGGGTATGATTGACCCAGAGCTCAGGGACAAGATCAGCTTTGTGTTGCTGCGGAAGCACCGGCACCAGACCAAGAAGCCCATCCACCGCTCGCTCGCCGACATCGGCAAGTCCGTGTCCTCCACCAACCGCAGCCCCAGCCGGAGTCCTGCAGCTGGGGCCGGTTTTCACCGCTCCACCGAGGACCTGCGCTCAAGGCAGGCCGGGACTGGGAACTACGGGCGTCTGCGACACGCACAGAGCAGAAGCATGAATGACATCGCCGACACCCCCAGCACAGACCAGCTGAAGAACAAGTTCATGAAGAAGATCCCCCGAGACGCAGAGGCTTCCAACGTTCTGGTGGGGGAGGTGGACTTCCTGGACAAGCCGTTTGTGGCGTTTGTGCGTCTGGCACAGGCCACCACACTGGGCGGCCTCACTGAGGTGCCTGTGCCCACCAGGTTCCTGTTCGTCCTGCTGGGGCCCCATGGCAAAGCCAAGTCATACAACGAGATCGGCAGAGCCATCGCCACGCTCATGGTGGATGACGACCTGATCGCCGGGATTGATGAGTTTCTGGATGAGGTCATCGTGCTGCCCCCAGGAGAGTGGGACCCCACAATCCGCATTGAGCCCCCCAAGAAACTGCCCTCCGCCGAGAAGAGgAAGTCGGTGTTCTCTGTGAACGAAGCCGGGCAGATGAACGGCActgcagggggtgggggtgggggcagtgATGACGAGGAGATGCCGGTGCCACATGAGCTGGGAGAGGAGCTGATGTGGACTGGGAGgttCTGTGGAGGACTGTTCCTGGACATGAAGAGGAAGCTGCCCTGGTTCCCCAGCGATTTCTTCGACGGTTTTCATATCCAGTCCATCTCCGCCATTCTCTTCATCTACCTGGGCTGCATCACCAACGCCATCACCTTCGGGGGGCTGCTGGGAGACGCCACGGACAACTACCAGGTACCTCCTGCACCTGCATCCACctctgcacacacacgcacccgaTGCACTGTGTTCTGCGTGTTCAGCGGGCAGCCCCTCATCATCCTGAGCAGCACGGGCCCCATCCTCATCTTCGAGAAGCTGCTCTATGACTTCAGCAAGGGAAACGACATTGACTACATGGAGTTCCGGCTGTGGATCGGGCTGCACTCCTGCCTGCAGTGTCTGGTGCTGGTTGCCACAGACGCCAGCTTCATTATCAAGTACATCACGCGCTTCACAGAGGAGGGCTTCTCTATGCTTATCTCCTTAATCTTCATCTACGACGCCATCAAGAAGATGATCGGCGCCTTCAAGTACTACCCCATCAACACCGACTTCAAGCCTGACTACGTCACGGCCTACAAGTGCGAGTGTGTGGCCCCTGATCCAGTGGCTACAACGATCTTCAATGTTTCAGCCCTGATGGCTCCGAACAACACTAATATCTCTGTGTACAATCCTGTCAATGTAACAGCGCTGGACTGGAGCCAGCTGAGTAAGAAGGAGTGTCTGAAGTACGGGGGCACCCTGGTGGGCAAGACGTGCAAGTACGTCCCCGACCTCGCCCTCATGTCATTCATCCTCTTCTTCGGGACCTACTCCATGACAGTCACCCTGAAGAAGTTCAAGTTCAGCCGCTACTTCCCCACCAAGATGCGTGCCCTGATCAGTGACTTCTCCATCGTTATCTCCATTCTGGTCTTCTGCCTGGTGGATTACTGGTTGGCACTGGACACCGCCAAACTGCACGTCCCCACAGAAATCAAGCTTCGCAAGCTGATCAGTGATTTCTCCATCTTCATGTCTATCATGACTTTCGTGGGTTTAGACATGCTAATGGGGCTCAATACTCCCAAACTCATTGTGCCCACTGAGTTTAAGCAGATCAGCGCTGTCATCGTCAACCGCAAGGAGCACAAGCTCAAGAAGGGAGCCGGGTACCACCTGGACCTGTTCTGGGTGGGCGTCCTCATGGCCATCTGCTCCTTCATGGGCCTGCCGTGGTATGTGGCCGCCACCGTCATCTCCATCGCCCACATCGACAGCCTCAAGATGGAGACGGAGTCCAGTGCGCCCGGGGAGCAGCCCCAGTTCCTAGGCGTCCGGGAGCAGCGGCTGACTGGCATCATGGTGTTCATTCTGACGGGATACATTCCCATGCCGGTGCTGTACGGCGTCTTCCTCTACATGGGCGTGGCCTCCCTCAATGGCATACAGTTCTGGGACAGGTGTAAGCTGTACCTGATGCCTGCCAAGCATCAGCCGGACTACGCCTACCTGCGCCACGTCCCTCTGCGGAAAGTGCACCTGTTTACCGTGGTGCAGGTGGTGTGCCTGACCGTGCTCTGGGTCCTGAAATCCACCGTCGCTGCCATCATCTTCCCTGTCATGatcctGGCTCTGATAGTGGTGCGGAAGATGCTGGACCTGGTGTTCTCCCAGCACGACCTGGCCTGGCTGGACGATATCCTGCCTGAGAAAGACAAGAAGAAAGCGGAcgacaagaagaagaagaaaaagtcccgaggaggaggggaggacaGCGACGATGAGGTCAGAGATGGGCCGGTGTTTCATTCCAACTCTGTAAAGAAAAGTAATTGGCTTCATTGTCAgcctcccacccctcctccagTGAAGATCCCCATGGATGCCCTTGGTCCCACCTCCTTCCTCGGCTCTCCAGAGTCTGATGGGCACCTTCATTCTAACTGCTCACCTAGCGACTCCGACCTGGACCGCAGCATCACTCTGCACCTGAAGATCTCGTGCCCATCCTCCCCCGCCGTCAGCCTGTCCCGGAACGCCGCCTGCTCCGTGCCCCAGGTGAAGATAGAGATGGAGTCCGACTATGatgacactgacacagacaggcGCCACAGGGACATGGGCAGCGAGACCACCTTATAGCAcgctgccccccccacctccaccctgCCCCCCCACTCCCACTGGCCCTCACAGAACGGCCTCGATCCACGCTTTACGACCGTCTGGCTAGCTGTACACGAGCGCCACTCGAGCCGCTCCAGACTGCGGCCGCCCTCTAGGTCTCTTTGCCATGCCCTCCACCTGTTGAGAGACTTCAGAGGAAAAACTAAGAAATAGACAAATAAGAAATGTGTGATGAGAGGTCAGTGAAGAGGCCAGCTCATTAGGATCAGAAGACCAGTGAGCTGTCCAGGGGGCAGAAATTGAGAAACTGTGCTGCAGTTCAATGAGCATGAGCCTGTGCCCGGCCACAACTCACTCTCGGGCACCAGCTTGGGCACCCATGTGGGTCCTTGTTCTCCACTGTACACGAGTCAGATGGTTTGCCTACAGTTAGCCAACTGCTTTGTTGGTGCTCGGTCACTTGCAAACGCAAAAGCAGTTTGACTTGTtcactctttctctttttctttcactttcaatTACTCTGCTCAACCCAAGACTGTGGCCTTCAAATCTCATCTTCTTCATgctctattttgttttttaaatttgtaggCAACCAGCTAGTAAAAATGTCATCCGTCTGTCTCAGGTTGATTAATATACTCACTTCATATGGACCGTCCGTAATCACCGTAGTGGCAGCAAGAATggcaaaatgtaatgcaaatgtcccggggagggagggagagagagagagcgtgactgtgtgtgtgtgtgtgtgtgtgagagagagggagagagagagacagagagagagagtgtccgtcagtgcatgtgtgtctgtgtgtggtagACACTGTCAGTGTCTTTTTGGTTTGGATCTCCCAGAGATCCCAGCAAGGCTGTTTTTAAAGTTGTCATTAAAACTCACCCAGCATGTACCCTGCCAGCTGTCCCTCCTGCTCTACCCCCACAAAATCAGGAACGCTCAAAATTATAATCCTGAAGTAAAGTACCAggctgttgtattttgtaacataaCCCCAAAATGTGGGTTCCCCAATTGTTTTCCAACCTATGTAAAACCATTGTTTATCCTCTTCAGGGTTCAGAGGAGTTGTTATTAATAGGGTTTTAGAGGATGGGGTGGAAATAAATCCCTAGTTGGTGTGACAAGATGCTTTTGCAAGTAGCAAGGCCTGAGACCGTCTGCTTGTGTGTTGTAGGGAGGCTTCGTACCAGGCTGGTCattgtgtacacacacacacacacgcgcacataCATAAAGgtcttcagtgtttttgtaAAGGTGTTTCATAAGTAACTAATTTCATAATTGTTCCTtaagttaaaaggaaaaagctCATACTATGTTTATTGATTGCAGTAAGTGTTCATAATGAATAATACTTTGGAAAAAACCCACACGCTTACCTGTAAAGTTACGtgggtatatttatatatatcttctaaaaatgtatttccgtTGAAAAAGCATTGTCCTTGGTTTAATCAGGCTATCAGTCTGCTTTCTCACTGCACTTTTTTCCACCTGCGCTCTGGTGTGAATGGTTGAAATGCGCTGCATCACTCATCGCTTCATGCTGACATGGTGTGTCCCTGACGCAGCACGCGTTTGTGATGGCACTGCTGTAGTTTGGCATTGTGCCACCGCTGCCCGTCTGGGCTTGGTATTTACTGTGCAGTGTCACTTTTGTCAGCTGCAGTATAGGTAACAGCATTTTTAGGCAGATGGGAGCAGGAATTTAATACTATAGATGGAAACATCGTCCATCTTCGTGCCAGGTGTAGGCATGAAGCGCTGTGCAGTGGGCTGGGATGTCCACAGCCAGGTGTGGGCGAGTTGTGGAGCCTGGCCTGGGGCTGACCCCTCTCTCCTGCTTGGATATTGTTCACAAACCACATGATAACATTCCAGACTTCTGCGAACGTCCAACTCCCtccactaaaacaaaaaatatgaaaagaaaagaaaaaacttgatagttgtaaaagctttaaaaacaaatgtatagctTGTAATTCCTGAAATAGTCTGCACTGTTAAATACtaatacatgtattcatttgtcAAATGTGTGGGTGTAAAATCTGAATTCCTTGTCACTTGTATATTTGATGTGAGTTGTAAAGATGAATTTAACCAAGTTTAGTAATAAACTgatgtttggggaa

Function

GO: NA

KEGG:

id description
K13857 SLC4A5, NBC4; solute carrier family 4 (sodium bicarbonate cotransporter), member 5

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU82355 lncRNA downstream 19879 34218759 ~ 34220010 (-) True G65872
TU82349 lncRNA downstream 24330 34215057 ~ 34215559 (-) True G65867
TU82340 lncRNA downstream 122946 34116606 ~ 34116943 (-) True G65858
TU82325 lncRNA downstream 186781 34052460 ~ 34053108 (-) True G65845
TU82324 lncRNA downstream 188820 34049996 ~ 34051069 (-) True G65844
TU82420 lncRNA upstream 144491 34416657 ~ 34420190 (-) True G65915
TU82465 lncRNA upstream 242202 34514368 ~ 34515898 (-) True G65957
TU82523 lncRNA upstream 474775 34746941 ~ 34747361 (-) True G66001
TU82525 lncRNA upstream 476961 34749127 ~ 34749329 (-) True G66003
TU82526 lncRNA upstream 477278 34749444 ~ 34750150 (-) True G66004
AMCG00020810 mRNA downstream 9402 34222346 ~ 34230487 (-) True AMCG00020810
AMCG00020813 mRNA downstream 19209 34216896 ~ 34220680 (-) True AMCG00020813
AMCG00020811 mRNA downstream 28803 34208909 ~ 34211086 (-) True AMCG00020811
AMCG00020807 mRNA downstream 126200 34112643 ~ 34113689 (-) True AMCG00020807
AMCG00020803 mRNA downstream 164285 34056954 ~ 34075604 (-) True AMCG00020803
AMCG00020815 mRNA upstream 17821 34289987 ~ 34314712 (-) True AMCG00020815
AMCG00020821 mRNA upstream 161259 34433425 ~ 34441728 (-) True AMCG00020821
AMCG00020822 mRNA upstream 171120 34443286 ~ 34456490 (-) True AMCG00020822
AMCG00020830 mRNA upstream 247034 34519200 ~ 34522321 (-) True AMCG00020830
AMCG00020829 mRNA upstream 257617 34529783 ~ 34553326 (-) True AMCG00020829
TU82397 other downstream 192 34222315 ~ 34239697 (-) False AMCG00020810
TU82216 other downstream 870784 33368625 ~ 33369105 (-) True G65756
TU82127 other downstream 1348396 32886364 ~ 32891493 (-) True G65679
TU82083 other downstream 1582870 32655134 ~ 32657019 (-) True G65641
TU82051 other downstream 1629194 32607862 ~ 32610695 (-) True AMCG00020774
TU82568 other upstream 536608 34808774 ~ 34814169 (-) False AMCG00020836
TU82585 other upstream 590453 34862619 ~ 34865305 (-) True G66054
TU82718 other upstream 877402 35149568 ~ 35170179 (-) False AMCG00020853
TU82719 other upstream 890648 35162814 ~ 35170179 (-) True AMCG00020853
TU82875 other upstream 1407266 35679432 ~ 35684555 (-) True G66279

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00004609 True 3123 mRNA 0.54 24 NC_007121.7 44836171 ~ 44897986 (+)
grasscarp (Ctenopharyngodon idella) CI01000339_04456736_04479850.mRNA True 3482 mRNA 0.47 21 CI01000339 4456157 ~ 4479850 (-)