RNA id: AMCG00020815


Basic Information

Item Value
RNA id AMCG00020815
length 1164
RNA type mRNA
GC content 0.62
exon number 11
gene id AMCG00020815
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 34289987 ~ 34314712 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGAATGGCCCCAGTGCAGTGATGGCGGCCATTGCTGAGACCTGCTCCGAATCAATATCAAGTGGAAATCGCTTTTCTACAAGCGGTGCAGAAATCCTGGCGGCGGAAAAAACACTCGCCagactgcgctgtctgacaAGGAGCAGGGATCGTCATCTCTCCTGCTGCATCTGCTCTGCTGTGGTACTGCTGCAGGGCATGGCAGCGCAGCGCAATACGAAGCAAGGAGGAGAAACAGGCTGGGAATCGGAGAGGGAGTGGGATGGGCGGCTGGGCGCCTCCTTGTTGCCAGGGCCAGGGAGTGGAGAGCTGCAGACGGCCCACCTCCTGGGCCTGCTGGTGCTGTGTGTGGGGATCTATGCGGAAGTGGAGCGGCAGAAGAACCGCACCCTGGAGGGGGTGTTCCTGGCGCCGGCCGTGGTGCTGATCCTGCTGGGGCTGGTGATGTTCTCGGTGTCGCTGGTGGGCATGTTCCTGTGCgtgctgtgtgtgctgctggCTCTGCAGGCAATCGCTCTGCTCGTGGCCCTGATCTTCGAGAGGAAGAGCAGCATCCGCGAGGGAATCAAGCACTACTATGACGACCTGGACTTTAAGAATATCCTGGACTTTTTTGCGTGCTGTGGGGGAGATGAGTACAAGGACTGGGCTGTCAATCAGTACCACTTCTGTAATGGCACGGGCCCGCTGGCCTGCGGCGTGCCCTACACCTGCTGTGTGCGACGCAAGGTGGTGGGAGAGGTGGTGAACACACTGTGTGGATACAAGACACTGGACAAGGAGCGTGTCGAGCTGGACGAGGTGATCTACGTGCGCGGCTGCATCCACGCCGTCAACCTGTGGCTGAGCGACAACGTGGGCGCCACCGTGGGCTTGTGCTTCGCCGTGGGCCTTCcgcaggtcagagACATGGTGGACTTCCGGTTTCTGCGCCGGGCCGGCTACCAGTACAGCGAGCTGGACCTGTCTGGGGCGGGCTGGTGCCTCTGTCTGCCCCGGGACGGTGGCTACCTCCCAGTCCCCGCCTCCGAGCCTGAGACCTGGGCAGACGAACCCCAGGAGGCCCCCGTCCTCGCCGGCCCACGGCCCAGCGCTCCCCCGGAAGCACCGCCTGGGGGGTCACAGGAAATCGGTGCCTTCGATGAAGTGGACAACCGGGCATAG

Function

GO:

id name namespace
GO:0016020 membrane cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU82355 lncRNA downstream 69977 34218759 ~ 34220010 (-) True G65872
TU82349 lncRNA downstream 74428 34215057 ~ 34215559 (-) True G65867
TU82340 lncRNA downstream 173044 34116606 ~ 34116943 (-) True G65858
TU82325 lncRNA downstream 236879 34052460 ~ 34053108 (-) True G65845
TU82324 lncRNA downstream 238918 34049996 ~ 34051069 (-) True G65844
TU82420 lncRNA upstream 101945 34416657 ~ 34420190 (-) True G65915
TU82465 lncRNA upstream 199656 34514368 ~ 34515898 (-) True G65957
TU82523 lncRNA upstream 432229 34746941 ~ 34747361 (-) True G66001
TU82525 lncRNA upstream 434415 34749127 ~ 34749329 (-) True G66003
TU82526 lncRNA upstream 434732 34749444 ~ 34750150 (-) True G66004
AMCG00020812 mRNA downstream 17821 34239889 ~ 34272166 (-) True AMCG00020812
AMCG00020810 mRNA downstream 59500 34222346 ~ 34230487 (-) True AMCG00020810
AMCG00020813 mRNA downstream 69307 34216896 ~ 34220680 (-) True AMCG00020813
AMCG00020811 mRNA downstream 78901 34208909 ~ 34211086 (-) True AMCG00020811
AMCG00020807 mRNA downstream 176298 34112643 ~ 34113689 (-) True AMCG00020807
AMCG00020821 mRNA upstream 118713 34433425 ~ 34441728 (-) True AMCG00020821
AMCG00020822 mRNA upstream 128574 34443286 ~ 34456490 (-) True AMCG00020822
AMCG00020830 mRNA upstream 204488 34519200 ~ 34522321 (-) True AMCG00020830
AMCG00020829 mRNA upstream 215071 34529783 ~ 34553326 (-) True AMCG00020829
AMCG00020828 mRNA upstream 254900 34569612 ~ 34573502 (-) True AMCG00020828
TU82397 other downstream 50290 34222315 ~ 34239697 (-) False AMCG00020810
TU82216 other downstream 920882 33368625 ~ 33369105 (-) True G65756
TU82127 other downstream 1398494 32886364 ~ 32891493 (-) True G65679
TU82083 other downstream 1632968 32655134 ~ 32657019 (-) True G65641
TU82051 other downstream 1679292 32607862 ~ 32610695 (-) True AMCG00020774
TU82568 other upstream 494062 34808774 ~ 34814169 (-) False AMCG00020836
TU82585 other upstream 547907 34862619 ~ 34865305 (-) True G66054
TU82718 other upstream 834856 35149568 ~ 35170179 (-) False AMCG00020853
TU82719 other upstream 848102 35162814 ~ 35170179 (-) True AMCG00020853
TU82875 other upstream 1364720 35679432 ~ 35684555 (-) True G66279

Expression Profile