RNA id: AMCG00020819


Basic Information

Item Value
RNA id AMCG00020819
length 1484
RNA type mRNA
GC content 0.54
exon number 14
gene id AMCG00020819
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 34462466 ~ 34475645 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATTCGGTTGGCTGGGGAGTGGAGTCTGTGGTTCACGATCAGCGCACTAGCAGATATCGCGAGAGGTGCTGGAGTTGCGGAGGAAAGACAGCGGGTGAAGGGTTACGCAGCGATCTGGTCAAGGGACTGCCAACAGTGTTAATATTGCACTATATTTTAAACTCGCCGCTGCTCTGGGGGAATATCTTACAGACACTTTCGCGGTGAACTGCGATTCCTAACGCCGCTGCCATGACAGAGCTGAGGCACCGGGGCCCGCAGGAGAATGAGATGCAACAACAGCCCGATGACAAGggCTCAGAGTCAGAGGTGAGGACAGATGGAGAGGCGGCCTCAGACAGTGAGACGAAGCAGGACTCGGGGGTTCCTGAAATCCCCCCTACTGCCGATGACACCCCCGAGGTCCTCAACAAGGCCCTGTCAGGATTGTCCTCACGATGGAGGAACTGGTGGGTTCGTGGCATCCTCACTCTCGCCATgatctccttcttcttcctcatCATCTACCTGGGCCCAATAGTCTTAATGATGATCGTGCTGTGTGTGCAGATCAAGTGTTTCCATGAGATCATCATGATTGGCTACAGCGTCTACCACTCCTACCACCTCCCCTGGTACTTCCTGCTGTGCGTGAATTACTTCTTCTACGGCGAGACGGTGACGGACTACTTCTTCACCCTGCTGAGAGGTGTAGggtTCTGCATGTTCGTGTTGAGCTTGGTCAAGAAGCACTACCGCCTGCAGTTCTACATGTTTGGATGGACTCATGTGACACTATTGATCGTTGTGACACAGTCTCACCTGATCATCCACAATCTCTTTGAAGGCATGATCTGGTTCATCGTGCCCATCTCCTGTGTGATCTGCAATGACATCATGGCCTACATGTTTGGCTTCTTCTTTGGCCGCACTCCACTCATTAAGCTGTCTCCAAAGAAGACCTGGGAAGGCTTCATAGGAGGATTTTTCGCCACGGTGGTGTTCGGACTTCTGCTCTCCTATGTGATGGCGGGGTACCGCTACTTTGTGTGTCCGGTGGAGTTCAACAACGACTCCAACAGGTTCACTGTGGACTGTGAGCCGTCCGACCTCTTCCAGCTGCACAACTATGGCCTGCCAGCTGTCCTGCAGTCTCTCACTGGCTGGaaaACCGTGCGGATGTACCCCTTCCAGATCCACAGCATTGCTCtgtccgccttcgcctccctcATGGGGCCCTTTGGGGGTTTCTTCGCGAGCGGCTTTAAGAGAGCCTTTAAGATCAAGGACTTCGCCAACACCATCCCAGGGCACGGCGGAATCATGGACCGCTTCGACTGCCAGTACCTCATGGCCACCTTCGTCAACGTCTACATCGCCAGCTTCATCAGGGTGATGCAGCAGCTCCTGGCTCTGCGACTGGATCAGCAGCTGCACATCTTCAACTCCCTCAAAGCCCACCTGGTGGACAAGGGGCTGCTCTCAGCCATTGAGGAGGTGGCTTAG

Function

GO: NA

KEGG:

id description
K00981 E2.7.7.41, CDS1, CDS2, cdsA; phosphatidate cytidylyltransferase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU82362 lncRNA upstream 195366 34239889 ~ 34267100 (+) True G65877
TU82357 lncRNA upstream 200537 34222346 ~ 34261929 (+) True G65873
TU82308 lncRNA upstream 399871 34062152 ~ 34062595 (+) True G65831
TU82306 lncRNA upstream 411429 34049994 ~ 34051037 (+) True G65829
TU82117 lncRNA upstream 1580348 32879099 ~ 32882118 (+) True G65670
TU82462 lncRNA downstream 37012 34512657 ~ 34512879 (+) True G65954
TU82464 lncRNA downstream 38401 34514046 ~ 34515896 (+) True G65956
TU82472 lncRNA downstream 51222 34526867 ~ 34527075 (+) True G65962
TU82489 lncRNA downstream 201266 34676911 ~ 34732379 (+) True G65978
TU82515 lncRNA downstream 271248 34746893 ~ 34748114 (+) True G65994
AMCG00020824 mRNA upstream 5565 34452211 ~ 34456901 (+) True AMCG00020824
AMCG00020825 mRNA upstream 10739 34450528 ~ 34451727 (+) True AMCG00020825
AMCG00020823 mRNA upstream 12269 34445279 ~ 34450197 (+) True AMCG00020823
AMCG00020818 mRNA upstream 35617 34420834 ~ 34426849 (+) True AMCG00020818
AMCG00020816 mRNA upstream 43799 34413614 ~ 34418667 (+) True AMCG00020816
AMCG00020827 mRNA downstream 5734 34481379 ~ 34493390 (+) True AMCG00020827
AMCG00020826 mRNA downstream 22641 34498286 ~ 34502202 (+) True AMCG00020826
AMCG00020835 mRNA downstream 375017 34850662 ~ 34865362 (+) True AMCG00020835
AMCG00020840 mRNA downstream 403045 34878690 ~ 34879805 (+) True AMCG00020840
AMCG00020842 mRNA downstream 405846 34881491 ~ 34892993 (+) True AMCG00020842
TU82376 other upstream 50846 34404534 ~ 34411620 (+) True AMCG00020820
TU82307 other upstream 403001 34059111 ~ 34059465 (+) True G65830
TU82274 other upstream 502784 33954806 ~ 33959682 (+) False AMCG00020796
TU82157 other upstream 1354040 33107873 ~ 33108426 (+) True G65705
TU82142 other upstream 1473021 32946731 ~ 32989445 (+) True G65691
TU82530 other downstream 308567 34784212 ~ 34787474 (+) True G66008
TU82596 other downstream 492199 34967844 ~ 35008322 (+) True G66060
TU82706 other downstream 688168 35163813 ~ 35164985 (+) True G66149
TU82915 other downstream 1271580 35747225 ~ 35750354 (+) True AMCG00020874
TU82978 other downstream 1391748 35867393 ~ 35908402 (+) True G66362

Expression Profile