RNA id: AMCG00020822


Basic Information

Item Value
RNA id AMCG00020822
length 1479
RNA type mRNA
GC content 0.59
exon number 9
gene id AMCG00020822
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 34443286 ~ 34456490 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGACAGCTGTCTGTTATTTCCTCAGGCCTTTGCCCCCTCCCTTTCCTGCCGCTCACCCGGGTCTCCTGAGGATGGGCCTGAAGTGCTTGGCGGTCCTCACGGCGAAGATAGCACTGGGGATGAGGAATACGGTGCACCAGCCCAGGCAGAGCCAGGGTCCACCGTGTTCACGCACACTGTGGTGTACACGTTATCCAACGCCACGGCCAGCGGCAGGCAGGACAGGACCTTCGTAATGATCTGCAAGTACAAGAAAGACATTCCTCTCTTTTACTGTTACAGGCCCTCAGCAAAACTGGCAAACACCACACAAAGACACTGTCAGGCGAGCGATCGTGAGGTCCGCAGCACTCACTTGTACACCTCAGAGATGCTGAAGTTCATTCCCAGTTTGCTGATGTTCAGATACTCTGGGAGGTTTCTCGGATTATCAAGGAACTTGGAGGTGCAGGACACAGGGAAAGACGGGTTAGCAATGACAGAATCGAGCACACTGCGACACTGCCTGAGCCGCCACTGGGAGACGGGGGCAGCTGTGGGTCCTTACGCCATGAGTAGACGGGCCCCCGAGGCGGCCAGAACGCTGTCTTCATCGGTGTGCTGCCGAAGACCCAAGATGTTCAGTACCACGACCAGCAGGATCAAACAGCACAGTGCCAGCGCCACGGCCCACCTGCCACACACCCCCGCGAACGTCCCAAACTCAGAGTGGCCGGCAGGATTCGAAACAGTGATGTTCCTCAAGTCCTGTGCCACTCCCCCAGCGCAGCAGCAAgatgatgatggtggtggcgCCCGAGCAGGTTGCCATGGCGCCATGCTGGCACTTCAGATCCTGCTGGACCCGTCCCCCGCACTTCCCATGACAGCGGCAGCAGCAGAAGACAAGACCCACCAGGGGCACGACCAGCACGTAGAGCACCGCGATGATGGCGCACACCGTGTAGCCGGCCAGAAACTGGTGTACAAAGCCATACAGAGGTCCCAGCGAGCCTGCAGTGCTCAGGGTCTCGAGGGACACCTGCTGGTTTATATCGTGGAAACTGAGCTTCTCTGCGCCCCTCTGGCAGTACTGGGACCCCGCAGCGCTGGTCAGCAGCCACACGGAATCCGAAAAGCGCTGTTTGAAGCACGCCCGGCAGAGGGCATCATTGCAGCGTTACCTCGGCCTGCTAGTCAAGTTGTCATCGTGCAGCCACCTGCTGTCGCTGATTGGTGGCTGCGTTATAGTCCCCGATCAGGAACTCAACTTTTCATTGGACAACGCCACATCAATAACCCCCATCTCGTCCCGCCCCCTGCCGCCGGGGCATTATGGGACTTGCTGTGCACTGAGGCCTTCCTCCGCGGCTGTTCGGTCGTGCCCGGCTGCCTCCTAGAACTACAACTACCACAGTGCCCTGCGAAGAGCAGCGGCAGCGGGGGGTGGATTGCCCAACTCAGAGGCTATGGCACAGAAACGAAGAGCTGTTTTTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU82420 lncRNA downstream 23096 34416657 ~ 34420190 (-) True G65915
TU82355 lncRNA downstream 223276 34218759 ~ 34220010 (-) True G65872
TU82349 lncRNA downstream 227727 34215057 ~ 34215559 (-) True G65867
TU82340 lncRNA downstream 326343 34116606 ~ 34116943 (-) True G65858
TU82325 lncRNA downstream 390178 34052460 ~ 34053108 (-) True G65845
TU82465 lncRNA upstream 57878 34514368 ~ 34515898 (-) True G65957
TU82523 lncRNA upstream 290451 34746941 ~ 34747361 (-) True G66001
TU82525 lncRNA upstream 292637 34749127 ~ 34749329 (-) True G66003
TU82526 lncRNA upstream 292954 34749444 ~ 34750150 (-) True G66004
TU82573 lncRNA upstream 382271 34838761 ~ 34841242 (-) False AMCG00020837
AMCG00020821 mRNA downstream 1558 34433425 ~ 34441728 (-) True AMCG00020821
AMCG00020815 mRNA downstream 128574 34289987 ~ 34314712 (-) True AMCG00020815
AMCG00020812 mRNA downstream 171120 34239889 ~ 34272166 (-) True AMCG00020812
AMCG00020810 mRNA downstream 212799 34222346 ~ 34230487 (-) True AMCG00020810
AMCG00020813 mRNA downstream 222606 34216896 ~ 34220680 (-) True AMCG00020813
AMCG00020830 mRNA upstream 62710 34519200 ~ 34522321 (-) True AMCG00020830
AMCG00020829 mRNA upstream 73293 34529783 ~ 34553326 (-) True AMCG00020829
AMCG00020828 mRNA upstream 113122 34569612 ~ 34573502 (-) True AMCG00020828
AMCG00020832 mRNA upstream 263214 34719704 ~ 34728364 (-) True AMCG00020832
AMCG00020834 mRNA upstream 272637 34729127 ~ 34741671 (-) True AMCG00020834
TU82397 other downstream 203589 34222315 ~ 34239697 (-) False AMCG00020810
TU82216 other downstream 1074181 33368625 ~ 33369105 (-) True G65756
TU82127 other downstream 1551793 32886364 ~ 32891493 (-) True G65679
TU82083 other downstream 1786267 32655134 ~ 32657019 (-) True G65641
TU82051 other downstream 1832591 32607862 ~ 32610695 (-) True AMCG00020774
TU82568 other upstream 352284 34808774 ~ 34814169 (-) False AMCG00020836
TU82585 other upstream 406129 34862619 ~ 34865305 (-) True G66054
TU82718 other upstream 693078 35149568 ~ 35170179 (-) False AMCG00020853
TU82719 other upstream 706324 35162814 ~ 35170179 (-) True AMCG00020853
TU82875 other upstream 1222942 35679432 ~ 35684555 (-) True G66279

Expression Profile