RNA id: AMCG00020823



Basic Information


Item Value
RNA id AMCG00020823
length 945
RNA type mRNA
GC content 0.57
exon number 7
gene id AMCG00020823
representative True

Chromosome Information


Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 34445279 ~ 34450197 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


atggcgGGCAGCAGGACGTTGGGTGTGCTGACCGTGTGGCTGCTGACCAGCGCTGCGGGGTCCCAGTACTGCCAGAGGGGCGCAGAGAAGCTCAGTTTCCACGATATAAACCAGCAGGTGTCCCTCGAGACCCTGAGCACTGCAGGCTCGCTGGGACCTCTGTATGGCTTTGTACACCAGTTTCTGGACGCAGTGCAGCCCAACCCCTTCCCTGACGatttaatcCGGGACGCTTTGAACAATGTGTGGGATGTTGGGAAGGTGATGCGCTACCTGGCCGGCTACACGGTGTGCGCCATCATCGCGGTGCTCTACGTGCTGGTCGTGCCCCTGGTGGGTCTTGTCTTCTGCTGCTGCCGCTGTCATGGGAAGTGCGGGGGACGGGTCCAGCAGGATCTGAAGTGCCAGCATGGCGCCATGGCAACCTGCTCGGGcgccaccaccatcatcatcctGGCAGGGGTTGTCCTTGCTTTCACAGCAAACAGCAGAGTGACAGAGAGCGCACAGACCAGCGGGACATCTCTCTGCTCCTCTGTGGGCAACGTGGCAGACTTCCTTACCTCCGTATCCCAGAATATGCAGAACATTGTCAATCAGTTCTCTGTAGCcaacaacacatttcaaaatgaattgaaaGATGAGGACGATTTATACGGTAACGCGATTGTCTCATCCCTCCAGTCCTCAGTCCAAAGGACACTGAAcgatctctccatctccataaaagATGCAGCGAATGCTACAGAGCTCCTGCAGATCATAAACCAGATCTCCGCCTCCCTTCAGTCTCGACAGGCAGCACTGCAGTCCAGTCTGACCGAGCGTCGAGATGCCCTGCTTGGGATCAGCGAATACAACCGCAGTCTGGCCTCTGACCTGGATGGTCTGCAGATCGATGCAGACTTCAGCAAGGCAGGCATTCCAGGACCGGACTGCGCTTGA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU82362 lncRNA upstream 178179 34239889 ~ 34267100 (+) True G65877
TU82357 lncRNA upstream 183350 34222346 ~ 34261929 (+) True G65873
TU82308 lncRNA upstream 382684 34062152 ~ 34062595 (+) True G65831
TU82306 lncRNA upstream 394242 34049994 ~ 34051037 (+) True G65829
TU82117 lncRNA upstream 1563161 32879099 ~ 32882118 (+) True G65670
TU82462 lncRNA downstream 62460 34512657 ~ 34512879 (+) True G65954
TU82464 lncRNA downstream 63849 34514046 ~ 34515896 (+) True G65956
TU82472 lncRNA downstream 76670 34526867 ~ 34527075 (+) True G65962
TU82489 lncRNA downstream 226714 34676911 ~ 34732379 (+) True G65978
TU82515 lncRNA downstream 296696 34746893 ~ 34748114 (+) True G65994
AMCG00020818 mRNA upstream 18430 34420834 ~ 34426849 (+) True AMCG00020818
AMCG00020816 mRNA upstream 26612 34413614 ~ 34418667 (+) True AMCG00020816
AMCG00020820 mRNA upstream 36483 34406586 ~ 34408796 (+) False AMCG00020820
AMCG00020817 mRNA upstream 43155 34393701 ~ 34402124 (+) True AMCG00020817
AMCG00020814 mRNA upstream 88142 34342691 ~ 34357137 (+) True AMCG00020814
AMCG00020825 mRNA downstream 331 34450528 ~ 34451727 (+) True AMCG00020825
AMCG00020824 mRNA downstream 2014 34452211 ~ 34456901 (+) True AMCG00020824
AMCG00020819 mRNA downstream 12269 34462466 ~ 34475645 (+) True AMCG00020819
AMCG00020827 mRNA downstream 31182 34481379 ~ 34493390 (+) True AMCG00020827
AMCG00020826 mRNA downstream 48089 34498286 ~ 34502202 (+) True AMCG00020826
TU82376 other upstream 33659 34404534 ~ 34411620 (+) True AMCG00020820
TU82307 other upstream 385814 34059111 ~ 34059465 (+) True G65830
TU82274 other upstream 485597 33954806 ~ 33959682 (+) False AMCG00020796
TU82157 other upstream 1336853 33107873 ~ 33108426 (+) True G65705
TU82142 other upstream 1455834 32946731 ~ 32989445 (+) True G65691
TU82530 other downstream 334015 34784212 ~ 34787474 (+) True G66008
TU82596 other downstream 517647 34967844 ~ 35008322 (+) True G66060
TU82706 other downstream 713616 35163813 ~ 35164985 (+) True G66149
TU82915 other downstream 1297028 35747225 ~ 35750354 (+) True AMCG00020874
TU82978 other downstream 1417196 35867393 ~ 35908402 (+) True G66362

Expression Profile