RNA id: AMCG00020824



Basic Information


Item Value
RNA id AMCG00020824
length 945
RNA type mRNA
GC content 0.51
exon number 10
gene id AMCG00020824
representative True

Chromosome Information


Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 34452211 ~ 34456901 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


ATGCTGGTGGTGCTGGTGACCTTCCTGGTAGGGGGGAACATATACACTATGGGCTGCCGGAACTGGCGCAACAAAGAGATCTTGCTGTTCCTTGATAATCCGAGAAACCTCCCAGAGTATCTGAACATCAGCAAACTGGGAATGAACTTCAGCATCTCTGAGGTGTACAAtgccTGTGAGGAGGGGAAATCGCTGTATTACTCCATGCACCTGGATCAGTTTGGCTTTGACTTCGAGGTTGATAAGTATGTGAGCAAACTGAACAGCATTATCTCGGGTCTGTCTGTGAATCTGACTGGAGTGAGACTGCTGTCCAAGAAGGACAAGATGAGAATCTTTTACCTGAAGAACAGCCACATTGCTCATATCAACTACACGCTCATGCGAACACAGCTGGACAAGAAAGTGGTCCAGATAGACCTGCTGGGATACGCAGACAGACTGAGCAGTGCTGCCCAGCTGCAGAATGACCCCAGCATCAGAGACAAGTTTGAAGTGGAGGCCATGAGTATCAGAGAGCTGTACAACACCACAGTGAGGCAGCAGGAAGCAGATGCAGTGACCCAGTGTGTTGTGGACCAAGCAATAAACAACCTTAAGCAGTACCTGACATGGACGAAACAAAccATCATTACGAAGGTCCTGTCCTGCCTGCCGCTGGCCGTGGCGTTGGATAACGTGTACACCACAGTGTGCGTGAACACGGTGGACCCCTGGaaCGCCTACTGGCTCTGCCTGGGCTGGTGCACCGTATTCCTCATCCCCAGTGCTATCTTCGCCGTGAGGACCGCCAAGCACTTCAGGCCCATCCTCAGGAGACCCGGTGACCCCTTTAACACGGACAATACGTTCAGAATACCCAAGGCAAAGCTGAGAAACCCTAGTGTCTACGCCAACTCCAATCAAAACAACGGCAGCAACTACAATATCAACCTAAGCCAGTGA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU82362 lncRNA upstream 185111 34239889 ~ 34267100 (+) True G65877
TU82357 lncRNA upstream 190282 34222346 ~ 34261929 (+) True G65873
TU82308 lncRNA upstream 389616 34062152 ~ 34062595 (+) True G65831
TU82306 lncRNA upstream 401174 34049994 ~ 34051037 (+) True G65829
TU82117 lncRNA upstream 1570093 32879099 ~ 32882118 (+) True G65670
TU82462 lncRNA downstream 55756 34512657 ~ 34512879 (+) True G65954
TU82464 lncRNA downstream 57145 34514046 ~ 34515896 (+) True G65956
TU82472 lncRNA downstream 69966 34526867 ~ 34527075 (+) True G65962
TU82489 lncRNA downstream 220010 34676911 ~ 34732379 (+) True G65978
TU82515 lncRNA downstream 289992 34746893 ~ 34748114 (+) True G65994
AMCG00020825 mRNA upstream 484 34450528 ~ 34451727 (+) True AMCG00020825
AMCG00020823 mRNA upstream 2014 34445279 ~ 34450197 (+) True AMCG00020823
AMCG00020818 mRNA upstream 25362 34420834 ~ 34426849 (+) True AMCG00020818
AMCG00020816 mRNA upstream 33544 34413614 ~ 34418667 (+) True AMCG00020816
AMCG00020820 mRNA upstream 43415 34406586 ~ 34408796 (+) False AMCG00020820
AMCG00020819 mRNA downstream 5565 34462466 ~ 34475645 (+) True AMCG00020819
AMCG00020827 mRNA downstream 24478 34481379 ~ 34493390 (+) True AMCG00020827
AMCG00020826 mRNA downstream 41385 34498286 ~ 34502202 (+) True AMCG00020826
AMCG00020835 mRNA downstream 393761 34850662 ~ 34865362 (+) True AMCG00020835
AMCG00020840 mRNA downstream 421789 34878690 ~ 34879805 (+) True AMCG00020840
TU82376 other upstream 40591 34404534 ~ 34411620 (+) True AMCG00020820
TU82307 other upstream 392746 34059111 ~ 34059465 (+) True G65830
TU82274 other upstream 492529 33954806 ~ 33959682 (+) False AMCG00020796
TU82157 other upstream 1343785 33107873 ~ 33108426 (+) True G65705
TU82142 other upstream 1462766 32946731 ~ 32989445 (+) True G65691
TU82530 other downstream 327311 34784212 ~ 34787474 (+) True G66008
TU82596 other downstream 510943 34967844 ~ 35008322 (+) True G66060
TU82706 other downstream 706912 35163813 ~ 35164985 (+) True G66149
TU82915 other downstream 1290324 35747225 ~ 35750354 (+) True AMCG00020874
TU82978 other downstream 1410492 35867393 ~ 35908402 (+) True G66362

Expression Profile