RNA id: AMCG00020828


Basic Information

Item Value
RNA id AMCG00020828
length 2613
RNA type mRNA
GC content 0.57
exon number 2
gene id AMCG00020828
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 34569612 ~ 34573502 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CgcgtggctgtgtgtgtgtgtgtgtgtgtgtgtgagagagagagagtatgtgcgtgtacgtgtgcgtgtgcgGGAAGGGATTCTAATCCGCATCCACGTTTCTCCACTTCGCCGACCCTCTCCAAATGAACGATTCCCCCCGTGGATCTAACCCGCACGTAACGACACCGAGTCCGGCGCCAGGAGTCAGCGACAGCCCCCCCCGGAGCCCCGGTCGGAAGAGCTCGCCGggtctctgtctgtcccccGCGGATCCCCAACGCCAGGCGAAGCGACTCCCCATCCGGGTCCTAAAGATGCTGACCGCGCACACGGGTCACCTGCTGCACCCCGAGTACCTCCAGCCCCTCACGTCTGCACCAGTCAGCATAGAGCTGGATGCCAAAAAGAGTCCGTTGGCGCTGTTGGCTCAGACTTGCTCACAGATCGGAAAGCCCGACCCGCCGCCCTCTTCCAAGCTGAACTCGGTGACGTCCAGCGGGCTCTGCGACAAGGAGCCCAGCGGCAGGGCGTCCGGCGGATCGGGTCTGAAGCTCGGCGCGGCGGAGCACCAGCAGTCCCTGGAGGACAAGTCCAGCTTTAAGCCTTATTCTAAGATCGGGGGCGACTGTCGGAAGGACGGGACGGGTTCAGGCGTGACCGGCAGCGGGGATAAGGCCGGGTTTAGGTTACCGAGCGCCGCTTGCCCGAGCTTCCCCCCCCACGCCATGTCGCCAAATCCCCGGGGCTCCTCTCCACCCCAGGCGCACCCACAGGCGCAATCAGCGCCGCGACAGACGCAAACGCCGCCCCAGCCGCAGCAACATCTACAGGACAGCAAAGCGCCTGGTGGCGACATGATTCACTCGGATAACGGCAGTAACGGCCACAGCCACACCGCCAAAAGAGACTCGGAGCCGGCCAAGGGCAGCTCGGACAGCGCGCACCTCGCCAACTCGAGCCACGGGCGCGCCACGGCCAACTCCAGCAGCGCCAGCTCGGAGAACAGCCCGCACCACGACGGCAAAGGCGAGTCCCTGCCGTCGCAGACAGGCCTGGGCTCCGGACACATCGCGCCCGTGTCGCCTTTCAAGCCGGGCCACTCGGTTTTCCCGCTGCCCCCCTCCAGTATGGGTTACCACGGTTCCATCGTGGGCGCATATGCGGGCTACCCGTCTCAGTTCGTACCAGGGTTGGATCATACCAAGTCCAGCCTGGTGGGGGGACAATTGGGGGTTCCAGGGAAGCACCCCAGCTCCAGCCCCCTGACTGGTGCCTCCCCCCCCTCCTTCATGCAGGGATTATGCAGGGACCCCTACTGCCTGTCCTACCCCAACGCGCCCCACCTGGGGGGCAGCAACTGCTCGTCCTGTGTGCAcgacccctcctcctccctgaaATCAGGCTACCCTCTGGTGTACCCCACCCACCCACTGCACTCCATCCACCCCTCCTCCCTGTCCTCCAGCGCCACCCCCACCCTGTCAGGACACCCCCTCTACACCTATGGTTTCATGCTGCAGAACGACCCACTGCCCCACATCTGCAACTGGGTGTCTGCTAGCGGGCCCTGCGACAAACGCTTTTCCTCCTCCGAGGAGCTCCTGGCGCACCTGCGCACCCACACTGCCCTCCCCGGAGCAGACAAGCTCCTGGCTGGGTACCCCTCCTCTGGACTGGGCAGCGCTGCGGCCGCCTGCCACCTGCACCTCCCCCCCACAGGGCCCGGGAGCCCCAGCGGCCTGCCCGGCTCCTTCTCCCTGCGCAGCCCCCACAGCCTCGGACTCAGCCGCTACCACCCGTACGGCAAGGCCCACCTGCCCAGCGCCGGCACCCTGCCCATGCACACACTGCAGGCCTCTGCCGGCCCTTACTACTCCCCCTACGCTCTGTACACCCAGAGGCTGGGCTCTGCGTCTGCACTGGGCTATCAATAGTAGCTACAGAGGAGCGAGAGAACAGACTGatgcaaattaaactgttttgttttctcctgtgtgtttttttttcttttactttctttcttttgtgtttcctttttctttaaaaaaaaaaagttttcaaattTTCTTTCCCAggactgaaatgtatttatttaccaagCGAAATTTATCCAAATGCATtgttctaattattattattattgttattattattattattattattatccatatTTTATAAAGTTCTGTGGTATGTGACATGGCAAAGATAAATCGTTCGGCCtcttacaaagaaaaacacactttttttttttcttttttttttcctgccagATCaaattatttctctctttttataaCCATATCATTTACGTTCTTCTGCTACTTCCTGCTCCAGTCTACAGCGGGAGGACCCTGCATGTTCTGTCTCAGTGCCATGGAAACACATCCTGGTCTGTGTTTAaaattccatttatttttgatttgtacAGCTTACAGAAGAgatgtaatattttttgtaatgtatttggaGTGAGGGGGAGACGGGGCACAATGAGGGGGgggtgtaaaaagaaaaacgacaacaacaaacattCATGAAAAACCTAAGCGATGGCAGTGCTATCCACaaaagaggagggggggggtcttattttgtttaataaatgaaaacttgattatatttaaaaaa

Function

GO:

id name namespace
GO:0017015 regulation of transforming growth factor beta receptor signaling pathway biological_process
GO:0031065 positive regulation of histone deacetylation biological_process
GO:0048596 embryonic camera-type eye morphogenesis biological_process
GO:0045892 negative regulation of transcription, DNA-templated biological_process
GO:0034333 adherens junction assembly biological_process
GO:0034111 negative regulation of homotypic cell-cell adhesion biological_process
GO:0030902 hindbrain development biological_process
GO:0030335 positive regulation of cell migration biological_process
GO:0060828 regulation of canonical Wnt signaling pathway biological_process
GO:0016363 nuclear matrix cellular_component
GO:0000118 histone deacetylase complex cellular_component
GO:0005737 cytoplasm cellular_component
GO:0003677 DNA binding molecular_function
GO:0042802 identical protein binding molecular_function
GO:0042826 histone deacetylase binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU82465 lncRNA downstream 53714 34514368 ~ 34515898 (-) True G65957
TU82420 lncRNA downstream 149422 34416657 ~ 34420190 (-) True G65915
TU82355 lncRNA downstream 349602 34218759 ~ 34220010 (-) True G65872
TU82349 lncRNA downstream 354053 34215057 ~ 34215559 (-) True G65867
TU82340 lncRNA downstream 452669 34116606 ~ 34116943 (-) True G65858
TU82523 lncRNA upstream 173439 34746941 ~ 34747361 (-) True G66001
TU82525 lncRNA upstream 175625 34749127 ~ 34749329 (-) True G66003
TU82526 lncRNA upstream 175942 34749444 ~ 34750150 (-) True G66004
TU82573 lncRNA upstream 265259 34838761 ~ 34841242 (-) False AMCG00020837
TU82629 lncRNA upstream 325282 34898784 ~ 34942966 (-) True G66087
AMCG00020829 mRNA downstream 16286 34529783 ~ 34553326 (-) True AMCG00020829
AMCG00020830 mRNA downstream 47291 34519200 ~ 34522321 (-) True AMCG00020830
AMCG00020822 mRNA downstream 113122 34443286 ~ 34456490 (-) True AMCG00020822
AMCG00020821 mRNA downstream 127884 34433425 ~ 34441728 (-) True AMCG00020821
AMCG00020815 mRNA downstream 254900 34289987 ~ 34314712 (-) True AMCG00020815
AMCG00020832 mRNA upstream 146202 34719704 ~ 34728364 (-) True AMCG00020832
AMCG00020834 mRNA upstream 155625 34729127 ~ 34741671 (-) True AMCG00020834
AMCG00020833 mRNA upstream 177877 34751379 ~ 34755314 (-) True AMCG00020833
AMCG00020831 mRNA upstream 189691 34763193 ~ 34770642 (-) True AMCG00020831
AMCG00020839 mRNA upstream 213769 34787271 ~ 34791056 (-) True AMCG00020839
TU82397 other downstream 329915 34222315 ~ 34239697 (-) False AMCG00020810
TU82216 other downstream 1200507 33368625 ~ 33369105 (-) True G65756
TU82127 other downstream 1678119 32886364 ~ 32891493 (-) True G65679
TU82083 other downstream 1912593 32655134 ~ 32657019 (-) True G65641
TU82051 other downstream 1958917 32607862 ~ 32610695 (-) True AMCG00020774
TU82568 other upstream 235272 34808774 ~ 34814169 (-) False AMCG00020836
TU82585 other upstream 289117 34862619 ~ 34865305 (-) True G66054
TU82718 other upstream 576066 35149568 ~ 35170179 (-) False AMCG00020853
TU82719 other upstream 589312 35162814 ~ 35170179 (-) True AMCG00020853
TU82875 other upstream 1105930 35679432 ~ 35684555 (-) True G66279

Expression Profile