RNA id: AMCG00020838


Basic Information

Item Value
RNA id AMCG00020838
length 3234
RNA type mRNA
GC content 0.53
exon number 12
gene id AMCG00020838
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 34818213 ~ 34826629 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CCAGCTCTTTGGACCCTCTGCCCCCCAGCTGGCCGTCCCCTTTTGTGACCATGAGCAGTGACGCCCCCCCCGAGGGgcccccttctccctctccctcaccctgcCACTCCCCACAGAGGGAGCGATTTTCACGGCGCACCAGTGAAAGTGACCCTGACTTCCTGCGCCCCAGTGAATCGGCAACACCCCCTGGGCAAGACCTGGACTCCACGGAACACAAGAAACGTGTCTCAGTTATTCTCCAGAGCCCTtCCTTTAGGGAGGAGCTGAACAGTTTGATCCAGGAGCAGATGACCAAGGGAAACAACTCCTCCAACCTATGGGCGCTGCGGCAGATTGCAGAGTTCATGGCCTCACAAGGCGCGCCCTCCGCCCTACCCATCTCTCCGTCCAATCTGATGATGGTGACCCCGATCAATGACCTGCAGGCCATGGAGCCGGGGGGTCTGGTGAAGGGCGAGAGGCTGATGCGCTGCAAGCTGGCCAGTGTGTACCGCCTGCTGGACCTGTATGGCTGGGCCCAGCTCTCCGGCACCTTCCTCACTCTGAGAGTGAGCAAGGAGCAGGACCACTTCCTGATCATCCCCGAGGGTCTGTCCTACAGCGAGGTGACGGCGTCCAGCCTGGTGAAGGTGAACGTGCTGGGGGAGGTGGTGGAGAGGGGCAGTACGGCTCTCCAGGTCGATGCTGCAGGATTCCACCTGCACTCTGCGCTGTACTCTGCCCGACCAGACGTCCGTTGTGCCCTGCACCTGCACACCCCAGCCACCGCTGCGGTTTCAGCCATGAAGTGTGGACTCTTGCCCATATCCCACGAGGCCctgctggtggggggggtggcgtACGTTGACTACAATGGAGCAATggatgaggaggaggacaggGTGGCAGCGCTGTGCAGTGCAGGCGGGGAGCAGAACCTGATCCTGCTGGACCGGGATAAACAGCGCCCCCACCAAGTCGGCTCGGTGGGCTGGGCAGGCTCCACCTTCGGCCCACTGCACAAAAGCCGTGTGGGAGAGCACGAGTTTGAGGCGCTAATGAGGACCCTGGACAACCTGGGATACCGGACGGGCTATGCTTATCGGCACCCAGTGCTGCTGGAGCGGGCCAAGGTGCGCAGTGAGGTGGAGATCCCGGCCACCTGCACGGCCTTCAGTTTCGAGGCGGAGGGCACGCCCCGGCCCGGCCCCCGGCCCCACGCGCacaagcagcagcaggagaAGACGCGCTGGCTCAACACGCCCAACACATACCTGCGTGTCAGCCACGACCAGACCAGCGCAGCTCAGCCTCGGACCACGTGGCTCAAGGCGGAGGAAGTGAAGCCCAGCAGCGGCACAGCCATCAAGATCGAGAACCCCAACCAATGTGTGAAGCTCTCTATGTGCTCCAGTCCACAGATGCTGACCTGGCACTGGCTGGGGCCCCCCCAGAacATTGAGGAGCATCTGGAGAATGAGGATGCCCCCCCCGCTGAAGATAAAGAGGCCAAGCCCACGGAGGTTTCGAAGGGCGTGTCCGATGGGCCAGCCGCAGTGGTGCTGAacgggaaggaggaggaggagcggggCCTGGAGAAGAGCATGCAGCAGCTGTCCACACGGGGCGACACCGAGACGCCCCCCCGAGCCAAGCCCGACGCCCCTCCCCCGGCCACCACGCCCGCGCCGCCAACCGCGCCCACCCTCTCCCCTGAGGGATCGCCGTCCAAGTCCCCCtccaaaaagaagaagaagttCAAGGCGCCTTCCTTTCTCAAAAAGAGCAAGAAGCAGAAGGAGAAGGCAGAAGCCTGATCCATAACTCCCTcaccccgctctctctctctctctctctctctctctttctatcgcTGGCTGGCTGTTTACGCTCCCCCCCataccacacatacacacacaaaccataaTTATGTAACTCACCCCCTCCACCCCTtcccaccaccacctcctcctgcCCGGTTTGAGGCTCATTACTgtttctccagctcctccacctCTCCTCTTCCAcacccttcctctctccctctctctctctctctctctctctctctctctctctctctattattttcattatctgattgttatgtttatttatttatttatttatttattgattgattgtgatGCGAAAGGATAAGTCTTTCCAATCTTTGAAAGCTTTTTGCAGTGTGGCcacttgacacacacacacacacacacacacacacacacacagacaacggTACACATATTGTGAATCACACAGTCACTACCACAACAGAGCACTGACCAGACCTGTGTAAGACACTGAAGAGTCAATCCTGGATGCAGGGATGCACTTATTTTAATCTTCCTGTACACTCTACACACCTATACACATAAACATGCTGTATACATTCCAGGCTGGAATGTCGTGCTTTATGACCCCGCCAGGTTTCCATAGTATGTCAGCCATCATGGTTCTCAGCTGTGTCCCTGCACGGTTTTGATCCAAGATGGCAATACGGGACTGGCAGGATTCAAAGAGCACTCAACACCCAGTCTGCAAAGCATATATCGctacacaggcacacacagacatgtcGCAAAACTGTACActgacaataaaaaagaaaaagaaaaaaagaagtgattctttagtttggttttgttctttctcTTGTTTCTGTTACACTACAGCTTAAGAAAGGTGTGCACTggtgtaaataatatataaataaatatacagtatagtatCATGGTTTATATCAGCTATCTTGATATGTATCCACTGTTGCCTGTCCGACACGCTTCTGAGTACAGAGGACACatcagggaaaaaacaaacaaacataaactaaacaaaaactatGAATAAGTTAAATTACTAATTAATAATTAGAAAATTCCACTGGATTAAGAATGAGATACAGACAGCACATTCCGCTTTTTGCGTGGCTTGTAGGCGCAGACAAAGCCTGACTCTGAAGGCACTTGACATTCCCtcttttgcaattgtttttttttataatatctCTATAAAAAGACTCTTATTGCTGTACCTGTtacaattgtaattatattttattgttactcTTTACAGTCATTGTTGTTATACATTTgctggagttttttttattttcagttctggttttccttttgtcttttttttggtttgtttgttttttggtattaGAATGCAAAAGTGAAAtactggaataaaaaataaatgaaataaaacattagtgATGTACCTGCCATTAAAGATGAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU82526 lncRNA downstream 68063 34749444 ~ 34750150 (-) True G66004
TU82525 lncRNA downstream 68884 34749127 ~ 34749329 (-) True G66003
TU82523 lncRNA downstream 70852 34746941 ~ 34747361 (-) True G66001
TU82465 lncRNA downstream 302315 34514368 ~ 34515898 (-) True G65957
TU82420 lncRNA downstream 398023 34416657 ~ 34420190 (-) True G65915
TU82573 lncRNA upstream 12132 34838761 ~ 34841242 (-) False AMCG00020837
TU82629 lncRNA upstream 72155 34898784 ~ 34942966 (-) True G66087
TU82668 lncRNA upstream 176949 35003578 ~ 35077562 (-) True G66123
TU82675 lncRNA upstream 253049 35079678 ~ 35081867 (-) True G66126
TU82676 lncRNA upstream 253049 35079678 ~ 35081867 (-) False G66126
AMCG00020836 mRNA downstream 3919 34808604 ~ 34814294 (-) True AMCG00020836
AMCG00020839 mRNA downstream 27157 34787271 ~ 34791056 (-) True AMCG00020839
AMCG00020831 mRNA downstream 47571 34763193 ~ 34770642 (-) True AMCG00020831
AMCG00020833 mRNA downstream 62899 34751379 ~ 34755314 (-) True AMCG00020833
AMCG00020834 mRNA downstream 76542 34729127 ~ 34741671 (-) True AMCG00020834
AMCG00020837 mRNA upstream 12132 34838761 ~ 34841323 (-) True AMCG00020837
AMCG00020845 mRNA upstream 63618 34890247 ~ 34891705 (-) True AMCG00020845
AMCG00020849 mRNA upstream 183262 35009891 ~ 35023812 (-) True AMCG00020849
AMCG00020854 mRNA upstream 259188 35085817 ~ 35099957 (-) True AMCG00020854
AMCG00020851 mRNA upstream 274378 35101007 ~ 35111425 (-) True AMCG00020851
TU82568 other downstream 4044 34808774 ~ 34814169 (-) False AMCG00020836
TU82397 other downstream 578516 34222315 ~ 34239697 (-) False AMCG00020810
TU82216 other downstream 1449108 33368625 ~ 33369105 (-) True G65756
TU82127 other downstream 1926720 32886364 ~ 32891493 (-) True G65679
TU82083 other downstream 2161194 32655134 ~ 32657019 (-) True G65641
TU82585 other upstream 35990 34862619 ~ 34865305 (-) True G66054
TU82718 other upstream 322939 35149568 ~ 35170179 (-) False AMCG00020853
TU82719 other upstream 336185 35162814 ~ 35170179 (-) True AMCG00020853
TU82875 other upstream 852803 35679432 ~ 35684555 (-) True G66279
TU82986 other upstream 987340 35813969 ~ 35819830 (-) True AMCG00020887

Expression Profile