RNA id: AMCG00020847


Basic Information

Item Value
RNA id AMCG00020847
length 7566
RNA type mRNA
GC content 0.53
exon number 20
gene id AMCG00020847
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 35056144 ~ 35076420 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGATCATCGAGGATGAGGTCTTCATACCAGGAGGTTTGGACCCCAGCTTGGCCCGTttacccccccctccacccgCCAGACAGCTTAAGGCACCTTCCCATGCTGAGAGTGCTGGAGACACTGGCTCGGCTCTCTTGGTTTGTGGCAAGCTGTCTGGTCTGCAGTCCTCCCCAGGacctgccttgaaatgtcttgTTGGCCCAAAGTCACAGGTCGTTGACGGCTCCTTCCCGTATGACCCTGTCTCCTGGCAACAAGGCACCAATCAGCCGGCAGGTTCCCTCTCCGTGGTAACCACTGTGTGGGGGGTGACTAATCCCTCGCCCAGCCAGGTGCTGGGCACGCCGATGGGTCCAGGTGGAAACTCCGCTGGCAACCATATGATGCCCGGCAGTAGCCCTGGCATGAACTCCCCGCAGTTCATGGGTCAGCAGGGCTACCCAGAGCCTAACAAGGGATACATGCAGTACGGACGGCCCGGGGGAGGGTACCCCACAGGGCCGGGATATGGGGGCAGTTACCAGAACAGTGGTGGGGGTTCAATGGGGGTGCCCCCTCATGGCGTTCGTCCCCCTTCGGACTTCACCCAGGCGGCAGCGGCGGCAGCAGTGGCTGCGGCAGCCGCCACCGCAACCGCTACAGCAACGGCAACGGTGGCAGCGCTGCAGGAGAAACAGAACCAGGAGCTGAACTACGGACCGATGGGTGGTGCTTCCTCCTACAATAGTCAGTTCGTACCTCACGGGGGACCCAGGGGCCCCCCCGGCATGGGAGGCACGGGCATGGGCCCCTCCCGACCCCCCTCCATGGGGCCCATGTATAACACGCAGGGCCAGCGGCTGCCCCAGCACCCAGGggATTCCCTGGGCAGCAGCAGTATGGCCCTGGGATGGGCAGTGCCGGCCCGCCAGCCCATGCAGTACCACCCTAGCGCCCAGCGCtctgccccctctccctcctacCCTGGCCACAGGATGCCAATGCAGCAGGGTGGCATGGGGCAGTACCCCCCCGCACCAGGCAACCCAGGGCAGTATTACAAGGCGCCTGAGCAATTCAACGGACAGAACAGCGGCCTGTCTGGagcaggagggggaggaggcggCTACACCAACTTCAACCAGCCTGCTGTCAATGGGccggGACGAGCAATGCCGGGGTACCCCAGTTCACCCCTCCCAGGGAACCCTACCCCCCCTATGACCCCAGGCAGTAACATGGCCCCCTACATGTCCCCAGGGCAGGATGTGAAGTCTCCCTTCCTGCCTGACATCAAACCCAACATCAGCTCGCTGCCGCCACCCCCAACAGGAAACCCCAGTGATGACCTCCGGCTGACCTTTCCCGTGCGGGACGGGGTTGTGCTGGAGCCGTTCCGATTGGAGCACAACCTGGCAGTCAGTAACCACGTGTTCCAGCTGCGGGACTCCGTTTACAAGACCCTGATGATGAGGCCGGACCTGGAGCTGCAGTTCAAGTGCTACCACCACGAGGACCGGCAGATGAACACCAACTGGCCGGCCTCCGTGCAGGTCAGCGTGAACGCCACGCCCCTCACCATCGAGAGGGGCGACAACAAGACCTCCCACAAGCCCCTGTACCTGAAGCAAGTGTGCCAGCCAGGCAGGAACACCATCCAGATCACGGTCACCGCCTGCTGCTGTTCTCACCTGTTCGTGCTGCAGCTGGTGCACCGACCCTCTGTACGCTCGGTGCTGCAGGGTTTAATGAAGAAGCGTCTGCTGCCAGCAGAGCACTGCGTCACTAAGATAAAGCGTAACTTCAGCAGTGGCACAATCCCAGGCACCCCAGGGCTGAACGGGGAGGACGGGGTGGAGCAGACAGCCATCAAAGTATCGCTCAAATGTCCCATCACCTTCCGCCGTATCCAGCTGCCGGCCAGGGGGCACGACTGTCGGCACATACAGtgCTTTGATTTGGAGTCCTACCTGCAGCTAAACTGTGAGAGAGGAACCTGGCGCTGCCCAGTGTGCAATAAGACCGCTCTGCTGGAGGGACTGGAGGTGGACCAGTACATGCTAGGGATTCTCATCTACATCCAGAActCGGACTACGAGGAGATCACGATCGACCCGCTGTGCAGCTGGAAGCCAGTGCCGGTGAAGCCCGACCTGCATATCAAGGAGGACCCGGATGGGCCGGCGCTGAAGCGCTGCCGCACGCTGAGCCCCAGTCACATGATCTTGCCCAACGTCATGGAGATGATCGCCTCCCTGGGCCCTGGCTCCACGCCCTATCCCCCGCTGCCACAGGGGGGCAGCAACAGCACACCTGAGTACCCCAGCCAGGGTTCGGGCTACTCCGGCCAGCCCAACTTCCCTGACTTCCCCCCAAATGCCCCGGGGACCCCCACCCTGGGCGAGTTCACCTCGGGACCCCCTCCTCTGTCCTACCAGGCCGACCTGCCCAGTGGGCTGTTGACCCCCGAGAAACCGCTGGGGCACCCTATGTCTGCACAGATGCCTCACTCTGGGCGCATGGACCCTTCCCACAATCCCatgcagcagcaacaacagcagcagcatccGGGTCTCCATGGTAACTCCCACCtagggggggggcagggagggcCATCCCTCCATTCCCGCAACCCTTCCCAGAATCCCCGGCTACACACGGAGGGCTCCTTTGGGCTGGGGGGGCCGGGAGGGCCAGGGGAGGTACCGGAACCTTCTCTTGACTTGCTCCCAGAGCTGACAAACCCGGATGAGCTGCTGTCATACCTCGGCCCCCCCGACCTTCCCAACAACAGCAACGACGACCTGCTCTCGCTGTTTGAGAATAACTGAGCATGCCCCCATGGCCCCCGCCCCCCGTCCCCCACAGGGACTGAGAAACCTCATATCCCGAGATCCTCTCCAGAGACGGACACTTTGCCTCCAGTTTGCAGAATCCATTGAGGgggatgagaagaaaacaattggAAAATAATGAACTACTTTAGTCCCCTGCAGCtggaaactgcaaaaaaaacaaaaaaaaaaaaacacacatttcccaCAATTCCTTAGGGCAGACTTGAAAACTTTTaaagggcagcagtgtggtgccgatctgtgtgtgtggcacaGGACTACAGCACACACAATTATTGGGACATGACCTTTCAACTCTGAACCAGAGGGACACCCTCCTGACTTGCTTTctatacccccccaccccccccaccccaaaagcCATCACAGCCACTGTCATGTGAGTCTGGCATTTGTATCCATGTGTGCCACTGCAAATAGCATCTCTCAGCAGCCTTTAGGGCAGGTCTCTGACTGCGGCGTTCCTTTGGTGGTGATGAAGGTGGTGGGGTAGCCAATCGGCCAACCCTGCTTCTGCAGAGGGGCAGTGTGGCTCAGAGTTGAGGGCAGAGGATGGGGGCAACAATTGAGGACTACAAAACCCACAAAAGATTAAATTTAATGTAGTTACTAAATGTAATCGATGAATGAAggaacaacatttttaaaaataaaaaggaaggaaaaaataaaggaagaatAGAAATTGTCCCATAATCTGGAAACTTCCAGCTGAGACGGACAGGAACCAGGGGGAGACCATACTGCTGACCAGGGCCCTCCACCGCCCCACCTGTGCCCGCACCCAAGACCCCGACTCCATGGGCTCCACACTGCCGCACGCAGGTGCTTGCCCCTGTGCCCAGACGTCGTCTTCCGGTGCCACCTCTGGCTCCAGCAGGGGTGTCCTCTTCTTATTTtataagcatttttattttattttttacctgtATGCCACCACGCTGCACAACCTGGTCCCGGAACCACAGGCCATCGCCCCCCAGGACTGTCCCTGAGGGGGGTGTTCTGGGGaaagaaattgttttaaaagtgcgagaaatggttttaaattgttttgtttgtatgttttttatatatatttcttctttagaagacaacaaacaacaaaaaatctataGGAAAAAGTAGAGCATTGTATTGATCCCAGAGCTGTACTGAGCGCCCGCCTGACCACCTGTCCCACTTCGATGAGGTCCAGTGGGAGGCGTCTCATCGCGCCGTGTCCAGCCACAGTTTTTGAATTTCGTTTTCTCCTCAGACTCCTGTTCTCTAGCCTGCGACGATCCTCTGTAGAGCAGGGTGACATGCTCATCGCTGAACTGGCTTCAATGTATTTCATGTCAATTTGAGTTCAAGTTTCCCAGGCCCTCTAAacaaaaaggcttttttttttttttttaatcacccaGTACCCCCGCCCCACTCGAGAGACCAAACAAGATTGtgtttgactttatttttattttttctttggtccatttatatatattttttaactgcgTCATGGATTAAAATCAAGACATCAAACCTAGCTGCGCCTGCCATTCCCTGGGCCTCATGGGAGGTTGCCACTGGGTAGAAGCAGACCCACAAAAGTGCAGCTTTGTGTGCTGAGGATTGGCAGCTGAAGCTTGGACTGTAGTGGCAGCCTGTGTCTTGTGAAGGGACGCATGCGAGAGGCCAGGCAACCGCAATCTTGGATGCTCACGGAGTCATTTATTCATAGGTTGCCATAAAACCATAAGCAATTCTCCTTTCTTGTCCATATAAAGGCTTGGACGAAGTGAGCTCTGCCACAGAACGCTGTGTGACTAAACCCTCCGTTGCGATTTGTGTGTCGtcgtctccctccctcctcctcctctctccactGCCCCAGTCTGTCTGCCGCTCTGGCACAGACCTGGAGTCTACCCTACAGGGTGAGAGTCTAAAGGTCAATCTGTTTATTTGCTTGTCCCaccttcccctcccctcccccctctccgACTGCTCCCCGATCTGGCAGTCCTCCAGAGTCAGTGGCACaagcagggtgtgtgtgtgattgtgtgtgataCGCACGGAGTACTAGAGCACAATACCCAACACGCTGGGCATCGTTAACGTGAAGCACATTTGTATTcgttcttaattttaatttgaccGGAACAGGGTTTCCTATTTGATGTGATTTTAAAccgaaaagaaaagacagaaatgcATCGTGACCTAATGACAGACCCGAGTGTTTTTACTCCTTCGCTCCTGTCACTGGCAGTTCATGACTGAGGCCTGGTGCCTGCTGTGATGTGAACTCCTCTGGTTTGGCTGGATTTGGCCCCTGGCTGTTGGGCTGAGGACAAACTGCTCCCTGGGTCCACAGCATTGGGAAACGCATCTCCGGGATCCAGGACCACTTCTGCTTCACGGTCTGTTCACTCGTATAGCAGGAGAGGGCCAGGTGCTATTCTCGTCTTCACCCCCGTCCTGTCTGTGAGGGCGCGGCGACACAACGCAGTCCTCCCCTTCGTGCACATGCAGTTGAGCTCGGCCTTCCCACAGaaagttgcattttatttagtttccctGCCTCTTTAATTTATAATATCAACAGTgtagacatttaaaatgcagtggaAAGACACCAAGGCCTCCCTCCGTGCAGCCTGCCACAGCTCTGCAGCCTCTCGGACCAGCTTCACCCAGTCTGAGCCGAGTGCCGCCCGCCCCGTCCCACGGCATTGCCCTGCGAGACGGCACTGTGGGCGACTGCTGCCTGGATACTGGTGCCAGCCGGAGCTGCTGCCTGCCCAGTGCAAAATTACTGCAGTACTTAAAGCACCATCTAATGGGCCTCCGAGACTCAACCCTGGGGCCAATTACTTAAAACACCTTGACTATCGAATAAGTTAATGACATAAGCAGCTTTCCATTTAAGCGGCCTATTGACTTCAATGGGTCGAGGCGCTCGTGTCGCTCCTTAAAGTCTAGGAACACTGCAGGGCCAAACTGAAGGGAAAACTGCACCGGAGCTGTGTTTAGACGAGCGCTCGCCCCCCAgacccacactgacactgccTCAATCTGGAGAATCTAGGCCACAGGAAGCCTTTTTATAGAAGATGCAAATTTTAAATCCCGAGATTGGTTTCCATGTGGCTCAGTAGCTGGTGTTGAGAGTAAAATGTACCCAGAGAACAGGCCTGTCCTTATTTCCACACCGAGCTCTTCAGAATCCCTTCCCAactctgtttattatttttttatttgcaattttaatttgtttctgtatatGTATCTCTTACTCTGAGGATTCGAGTCCTCGTTCTGACTCTTGAAGGACAGATTTACATGCACACGCCGCCCGCGCTGTCTTTCATCTCCAGATCACGACATCGGGCCTGATTGGTTTTCAATCCTATAATGCACACTGTGGATCAATACTTCAAGTAACAAacaagttacatttatgatAACTAAAGGGGACTAAAAAGAAACGTTGGGTAGGATCTTGGGAGAGCAATGACATCTGGGATAACCATAATAGATGTGCAGaggatgatttattattattattattattattttttttaaagcacaatacatttttctccctgtaaatatttaaaacactataATGAGACTGCATATGAacacaccctccctccctccctctctccgccGCTCACTTCCTGTCTGTCTTGATCTTGCCGAGGACAATCAGAAGGAAGTGAGGAAAGCTGTTCCTTTCCCAGCCCTGTCTGATCTTATTATTTATGACTGCTGCCTCACTCGGTGCTGGCTCTGCGCAGTTTGTATGATAAAGACCCAGATCAAGTGGGAGTTCCTTGATGTgcaactgtgttttgtttcaagtTATATGTGTATCatattcatcttttttattattattaataatgttattataattattattattaataaagataATTGGTGTACCCAGTGTGTCTGTCTCAATGGTTCCATGGTCTGTGTGGGAGGTGCATGTGTGGTAGGGGGTCAAAATCAACCTGAAGGCTTATTAGAAAGTAGCTCCCTCTCACTTCATTTTCCATGGGCCTCTGTTGGCCTACGGAAAATGAAGTGGGAGGGAGCTACTTTCTTAAAAGCCTTCAGAGCCTTTTGTTCTGACAGGCCATGGAGGGTCAGCCAGGGTCCTCGAGGGCCCACGTCTGGCCTGTGCTTCTCAATGCCATTTGGATCTTGGTCTAATTGAAATAAGGACTGCGAGTGCCTGATGTCTTAAATGCGTCTCGGACCGACTCATTAATATAATGGGAAATAATGGGAATCTCTAGAGGGCATGAATTAGATAATTGAACTAATCACCTAGCCACTATTTCCAGATATTAATCCGTTACTAAATGAAAGGTGCATCAAAACCTGCAGAGATCCAGCACCGACAGTGTGGGACAGGGAGCCACAAGACGTTACTAACTAGCAGCATTAAGATAAACTTTTgaattcattcaaatatttacgACAGACAGACCTTTTAATTCTTGTATTCTTCCGTCACCTGTACATATGTACAATTTGCGTTAATTCTGCAGTGCAATAATACTTTTGCCCTAATTCCCACTGACTCCAGAATAACTCCTGTTGAGCCGCTGTTCAGGATTCCTCCCATTCACATGCACCCAACAGaaacttaaaaattaaaatacatacagctacaaaaataaaataaccaacatattcaatattattagcCTGCCTCATAAT

Function

GO:

id name namespace
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K22403 ZMIZ; zinc finger MIZ domain-containing protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU82612 lncRNA upstream 29915 35025003 ~ 35026229 (+) True G66072
TU82516 lncRNA upstream 305993 34749498 ~ 34750151 (+) True G65995
TU82517 lncRNA upstream 306801 34749127 ~ 34749343 (+) True G65996
TU82515 lncRNA upstream 308030 34746893 ~ 34748114 (+) True G65994
TU82489 lncRNA upstream 323765 34676911 ~ 34732379 (+) True G65978
TU82704 lncRNA downstream 71794 35148214 ~ 35149418 (+) True AMCG00020855
TU82709 lncRNA downstream 90648 35167068 ~ 35170275 (+) True G66151
TU82810 lncRNA downstream 356848 35433268 ~ 35433558 (+) True G66231
TU82838 lncRNA downstream 476483 35552903 ~ 35553230 (+) True G66258
TU82891 lncRNA downstream 639625 35716045 ~ 35716249 (+) True G66290
AMCG00020846 mRNA upstream 50646 34977924 ~ 35005498 (+) True AMCG00020846
AMCG00020841 mRNA upstream 89659 34964622 ~ 34966485 (+) True AMCG00020841
AMCG00020843 mRNA upstream 119352 34935015 ~ 34936792 (+) True AMCG00020843
AMCG00020844 mRNA upstream 128514 34919818 ~ 34927630 (+) True AMCG00020844
AMCG00020842 mRNA upstream 163151 34881491 ~ 34892993 (+) True AMCG00020842
AMCG00020848 mRNA downstream 981 35077401 ~ 35082383 (+) True AMCG00020848
AMCG00020850 mRNA downstream 36739 35113159 ~ 35120161 (+) True AMCG00020850
AMCG00020858 mRNA downstream 69657 35146077 ~ 35147542 (+) True AMCG00020858
AMCG00020855 mRNA downstream 71183 35147603 ~ 35148487 (+) False AMCG00020855
AMCG00020856 mRNA downstream 82254 35158674 ~ 35161096 (+) True AMCG00020856
TU82596 other upstream 47822 34967844 ~ 35008322 (+) True G66060
TU82530 other upstream 268670 34784212 ~ 34787474 (+) True G66008
TU82376 other upstream 644524 34404534 ~ 34411620 (+) True AMCG00020820
TU82307 other upstream 996679 34059111 ~ 34059465 (+) True G65830
TU82274 other upstream 1096462 33954806 ~ 33959682 (+) False AMCG00020796
TU82706 other downstream 87393 35163813 ~ 35164985 (+) True G66149
TU82915 other downstream 670805 35747225 ~ 35750354 (+) True AMCG00020874
TU82978 other downstream 790973 35867393 ~ 35908402 (+) True G66362
TU83151 other downstream 1178279 36254699 ~ 36256511 (+) True G66506
TU83200 other downstream 1838395 36914815 ~ 36917436 (+) True G66551

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000204_00155459_00172374.mRNA True 2589 mRNA 0.59 17 CI01000204 155459 ~ 172374 (-)