RNA id: AMCG00020851


Basic Information

Item Value
RNA id AMCG00020851
length 2772
RNA type mRNA
GC content 0.52
exon number 14
gene id AMCG00020851
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 35101007 ~ 35111425 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GCTGAAGCGAGTGGTTTATTCAGTGAATTACACAAGTTATGCAAAACACATTGTACAATATCATTCGCTGcgtgtttttatatttacacgTATATAATATTCCCCAATCgtttttttaaagagatatATAAATCATGGAGAGATCTGATTAGCtacaacaaaacatttgtattagtGCATTCCCAAGACCACAGGGTTTCATGATGGAGTAGGTTTATGGGGTAGGAGACCGGCAGAAGtgctgtgtttgcttgtttatgaACTGCGATGCGGATACAAGACAATTCATACCGACGGACACACTTCTCTTTCAACGCCCACCTAAAAATCAGCGAGGCAGTCATATGACCGCCCGGCCCGAGTTCAGGGTTACTTTCCACTTCCTCAAAGTTTGCGCCAGCAGCCCCTCTGCGCTTTCAGACTCACTGCGTGTTTGTCTTTCGTCGCGCCCGGGCGAGTGCATGCTGCGCAGCCCGACACAGCGGCCGCTTCTGTGGAGAGAGACTGAGCGGGACAGCCCGATGGCCGGCTCGGAGGCGACGGTGTCTCCCGGGGTAGAGGCTCGGTGGCGGGGCCGCTGCCGCACTCCCACCGCGGTGCTGCTGGTGCTGTGTACCTGTCTGCTCAGGTGCGCCGGCTGCACCAAGCCCAGCAACATCGTGCTCATTCTCACGGACGACCAGGATGTGGAACTGGGAGGGATGACGCCCATGAAGAAGGCCCGAACTCTGATAGGTGATTCTGGAGCCACCTTCTCCAACGCGTTCACAGTGACGCCACTGTGCTGTCCCAGCCGCAGCAGTATCCTCTCAGGCAAGTACCCTCACAACCACCAGGTGCGGAACAACTCCCTGAGTGGCAACTGCAGCAGCCCGGCCTGGCAGCGGGAGCAGGAGACGCAGGCCTTCCCTGTGTACCTGCACAAGCTCAACTACCAGACCTTCTACGCTGGCAAATACCTCAACCAGtatGGGAAGCCTCAGGCAGGAGGCGTGAGTCATGTACCGCCTGGCTGGGACCAATGGCACGCACTGgtGGGGAACTCTCAGTACTACAACTACAGCCTGTCTGTGAACGGCAAGGAGGAGCAGCACGGGGACCACTACGCCACAGACTACCTCACCGACCTCATAGTAAACAGGTCCGTGGAGTTCCTGGACCACCGCAGGAAGAACCAGCCGTTTTTCCTGATGCTGTCTTCCCCCGCGCCCCATTCCCCCTGGACCCCTGCCCCCCATTACCAGGACTCCTTTGTCAGCACCAAGGCCCCTCGGGACGGCAGCTTCAACAAGCCCGGCGGCAAGGACAAGCACTGGCTCCTGAGACAGCCTCACAGCCCCATGGCCAACAGCTCCATCGACTTCCTGGATAATGCATTCCGTCGCAGGTGGCAGACCCTGCTGTCTGTGGATGACTTGGTGGAGAAGGTAGTGCTCAAGCTGCAGGAGTTGAAGGAGCTGAACAACACCTACATCTTCTACACCTCCGATCACGGCTACCACACAGGTCAGTTCTCGCTGCCCATTGACAAGAGGCAGCTGTACGAGTTCGATATCCGTGTCCCGCTGATGGTCCGTGGCCCAGGAATCAAGCCCAACCAGACCCTGCAGGGACCAGTGTTGAACATTGACCTGGGCCCCACCTTCCTGGACATTGCGGGGGTCGACGTGTCCCGCACCACCATGGACGGACAGTCTTTCCTGCCCCTTATGGCCCCTTCTCTGCGCAATGGCACCTCAAGGCCCTACTTCCTGGTTGAGTACACAGGAGAAGGACACACTGACCAAGACCCCGCCTGTCCTTTGTTGGGCCCTGGACTTTCTCAATGCTTCCCAGACTGCGTGTGTGAGGATGCCTTCAACAACACGTACGCCTGCGTCAGGACACTGAGCAGCGTCAACCTGCAGTACTGCGAGTTTGCGGACACTGAGTCCTTCGTGGAGGTGTAcaacttgacctctgacccccacCAGCTGGAAAACATTCTGAAGAAAGTGGACCCCAGCCTCCTGCAGAGCATGAACCAGCGGCTCATCCGCCTGCAGTCCTGCACGGGCGCTGCCTGCAGAGACACCAAGCACTGAGTCTCGGCCGGCACAGGCAGCCAGGATGTGAAGCACTTTCCCTCGGTGGTGGTGAAAAGCAGATAAGTCTGCAAGTCATCAATGTGAAACCAAAGActgtacttttttgtatttttttcctctaattgtgttttttttttttttttgtaatgatcacaagctttttaaatgaataaggGATGAAGGAGGAGGCGGTGGTGTGGGTGAATGCAGAAATGTCCCAGCCCAGTAATAACAACAACTGCAATAATTATTAATGATGATAATTTTACTCTGCGCTATGGATCGATTGCAGCAAAAGGAGGACAAGTGTTTGTTGTCATGGGATGAGATCAAACCATCTGTAAAGACAGTGAATGTGCACAGTCAGATTTTTTTGCTAAAGCTGTGATGGTTGGGCAGTGGTTGATTACACTAGATTTGCTTTCACTCAGTCCTGACCTCAGGgtgtgtaaaatacaataatcactttttttgtattcttttttttttttatcattaccTCCCTCAACACAAGCTGTGATTACCATTCGAGGTGTTTGCTTATTTGCTAATTAATGATTAGCAAGTGGCTTGTAGACATTGTATgggacattgttttgtttgcttacgataaaaaaattaaaataaaattatttaaaaggacaGCCAATGGCTTATCATGCGTTATTAAGCCACGTGGTTCACC

Function

GO:

id name namespace
GO:0030203 glycosaminoglycan metabolic process biological_process
GO:0005764 lysosome cellular_component
GO:0008449 N-acetylglucosamine-6-sulfatase activity molecular_function

KEGG:

id description
K01137 GNS; N-acetylglucosamine-6-sulfatase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU82674 lncRNA downstream 5354 35081965 ~ 35095653 (-) False G66126
TU82677 lncRNA downstream 5354 35081965 ~ 35095653 (-) False G66126
TU82675 lncRNA downstream 19140 35079678 ~ 35081867 (-) True G66126
TU82676 lncRNA downstream 19140 35079678 ~ 35081867 (-) False G66126
TU82668 lncRNA downstream 23445 35003578 ~ 35077562 (-) True G66123
TU82716 lncRNA upstream 23553 35134978 ~ 35135563 (-) True G66154
TU82744 lncRNA upstream 140977 35252402 ~ 35252669 (-) True G66181
TU82781 lncRNA upstream 233281 35344706 ~ 35349499 (-) True AMCG00020867
TU82807 lncRNA upstream 317759 35429184 ~ 35429394 (-) True G66228
TU82811 lncRNA upstream 321853 35433278 ~ 35433565 (-) True G66232
AMCG00020854 mRNA downstream 1050 35085817 ~ 35099957 (-) True AMCG00020854
AMCG00020849 mRNA downstream 77195 35009891 ~ 35023812 (-) True AMCG00020849
AMCG00020845 mRNA downstream 209302 34890247 ~ 34891705 (-) True AMCG00020845
AMCG00020837 mRNA downstream 259684 34838761 ~ 34841323 (-) True AMCG00020837
AMCG00020838 mRNA downstream 274378 34818213 ~ 34826629 (-) True AMCG00020838
AMCG00020852 mRNA upstream 12990 35124415 ~ 35127755 (-) True AMCG00020852
AMCG00020853 mRNA upstream 52110 35163535 ~ 35167869 (-) False AMCG00020853
AMCG00020860 mRNA upstream 78095 35189520 ~ 35197646 (-) True AMCG00020860
AMCG00020861 mRNA upstream 124326 35235751 ~ 35238599 (-) True AMCG00020861
AMCG00020862 mRNA upstream 142369 35253794 ~ 35256200 (-) True AMCG00020862
TU82585 other downstream 235702 34862619 ~ 34865305 (-) True G66054
TU82568 other downstream 286838 34808774 ~ 34814169 (-) False AMCG00020836
TU82397 other downstream 861310 34222315 ~ 34239697 (-) False AMCG00020810
TU82216 other downstream 1731902 33368625 ~ 33369105 (-) True G65756
TU82127 other downstream 2209514 32886364 ~ 32891493 (-) True G65679
TU82718 other upstream 38143 35149568 ~ 35170179 (-) False AMCG00020853
TU82719 other upstream 51389 35162814 ~ 35170179 (-) True AMCG00020853
TU82875 other upstream 568007 35679432 ~ 35684555 (-) True G66279
TU82986 other upstream 702544 35813969 ~ 35819830 (-) True AMCG00020887
TU83060 other upstream 864339 35975764 ~ 35986696 (-) False AMCG00020900

Expression Profile