RNA id: AMCG00020852


Basic Information

Item Value
RNA id AMCG00020852
length 768
RNA type mRNA
GC content 0.58
exon number 5
gene id AMCG00020852
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 35124415 ~ 35127755 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

atgGGGTATGAAATTACCTCAGGGCTATGGGAGTCCCTGCCGCTGTCTTGCACAGCAGCTCCCAGGACCCTTTCTGCACAGTGTTTGGAGTTCAAAGACTGCAATGATAAACGCACTGTCATTATCCCTGATATTGCCAATATAGGCGTGCGGCACTACAAACACCTCAGCATCCCGGTGACCAGGGCAGAGGCACGTGCCATTGAGCGGATTGTCAAAGAGGCAGTCCTTGCTGTCCTGCCGGGGGTGCAGCTCACTCTCACTGGAGGGTTCAGAAGAGGGAAACAGACAGGCCACGATGTGGACTTCCTCATCACGCACCCCGAGGAGGGCAAGGAGGAAGGGCTTCTGCCCAAAGTCATCAGCTGGTTGGAAAGCCAGgacCTCCTGCTATACAATAAGATGAACGAGAACTCGTATGGGGAGGCGAAGGAGCTGCACAGCCGCCCCGTGAGCAGCATGGATCGCTTTGAGAGGTGCTTCTCCATCTTCAGGCTGGACCAGCCTGCCTCCGGGACACAGCAGCCTGGGGCCTCGAGTGCCGGGGAGGCCCAGGGAAGTGCACCTCTCGGGGGGCAGGGTGCATGCGAGCCCCGGGGCTGGAAGGCCGTGCGTGTGGACCTGGTGGTGACGCCCATCAGTCAGTTTGCATTCGCCCTGCTAGGCTGGACTGGGTCACAGAAAAAGTTCCTGCCTGCCAGCTCAGAAGAGGAGATTTTCACCCATTTAGGACTGGACTATATCCCTCCATCTGAGAGGAACGCCTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU82674 lncRNA downstream 28762 35081965 ~ 35095653 (-) False G66126
TU82677 lncRNA downstream 28762 35081965 ~ 35095653 (-) False G66126
TU82675 lncRNA downstream 42548 35079678 ~ 35081867 (-) True G66126
TU82676 lncRNA downstream 42548 35079678 ~ 35081867 (-) False G66126
TU82668 lncRNA downstream 46853 35003578 ~ 35077562 (-) True G66123
TU82716 lncRNA upstream 7223 35134978 ~ 35135563 (-) True G66154
TU82744 lncRNA upstream 124647 35252402 ~ 35252669 (-) True G66181
TU82781 lncRNA upstream 216951 35344706 ~ 35349499 (-) True AMCG00020867
TU82807 lncRNA upstream 301429 35429184 ~ 35429394 (-) True G66228
TU82811 lncRNA upstream 305523 35433278 ~ 35433565 (-) True G66232
AMCG00020851 mRNA downstream 12990 35101007 ~ 35111425 (-) True AMCG00020851
AMCG00020854 mRNA downstream 24458 35085817 ~ 35099957 (-) True AMCG00020854
AMCG00020849 mRNA downstream 100603 35009891 ~ 35023812 (-) True AMCG00020849
AMCG00020845 mRNA downstream 232710 34890247 ~ 34891705 (-) True AMCG00020845
AMCG00020837 mRNA downstream 283092 34838761 ~ 34841323 (-) True AMCG00020837
AMCG00020853 mRNA upstream 35780 35163535 ~ 35167869 (-) False AMCG00020853
AMCG00020860 mRNA upstream 61765 35189520 ~ 35197646 (-) True AMCG00020860
AMCG00020861 mRNA upstream 107996 35235751 ~ 35238599 (-) True AMCG00020861
AMCG00020862 mRNA upstream 126039 35253794 ~ 35256200 (-) True AMCG00020862
AMCG00020866 mRNA upstream 172630 35300385 ~ 35310071 (-) True AMCG00020866
TU82585 other downstream 259110 34862619 ~ 34865305 (-) True G66054
TU82568 other downstream 310246 34808774 ~ 34814169 (-) False AMCG00020836
TU82397 other downstream 884718 34222315 ~ 34239697 (-) False AMCG00020810
TU82216 other downstream 1755310 33368625 ~ 33369105 (-) True G65756
TU82127 other downstream 2232922 32886364 ~ 32891493 (-) True G65679
TU82718 other upstream 21813 35149568 ~ 35170179 (-) False AMCG00020853
TU82719 other upstream 35059 35162814 ~ 35170179 (-) True AMCG00020853
TU82875 other upstream 551677 35679432 ~ 35684555 (-) True G66279
TU82986 other upstream 686214 35813969 ~ 35819830 (-) True AMCG00020887
TU83060 other upstream 848009 35975764 ~ 35986696 (-) False AMCG00020900

Expression Profile