RNA id: AMCG00020853


Basic Information

Item Value
RNA id AMCG00020853
length 938
RNA type mRNA
GC content 0.43
exon number 5
gene id AMCG00020853
representative False

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 35149568 ~ 35170179 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGCAGGAGGGAAAGCTGGAAAAGACAGCGGCAAGGCAAAGGCTAAAGCGGTGTCTCGCTCACAGAGGGCTGGTTTGCAGTTCCCAGTGGGTCGTATCCATAGACACTTGAAGACCCGCACCACAAGCCACGGGCGTGTGGGGGCTACAGCAGCCGTGTACAGCGCCGCCATCCTTGAATACCTTACTGCTGAGGTGAGGCTCTCCGAGGAACATGGCCATTATACGAGGAGAGGTGTCATTCCTCACATTCACAAATCCCTCATTGGGAAGAAGGGGCAACAGAAGACTGCATAGAGGAGCGGGTGAAGGGGGCGGCCCTCTCGGCGCAGAGCGGGGACGGGCTGCAAGATTATTccttttcccatttattttttttttattttttttaaaccgtaGTTCAAGTTCAAGGAACGAttgttaggttttttttgtttgtttgttttggtttttttttgagttgtaataatacaaaacaagaagaagaaaaaaaaactgcaaaaggaaaaaaaatactatataaaacatttgtacgttcttttagatttttgtttgatggacaggggaaaaaaatgtattgtcatgTTGTGGACGCAAATTTGTTGATTGGCTAGGGGTTCAACAgtgttttatacaaaaaaaatggaattgttAAACCATTTTTTACAAAAGAGACAGTCTCCTGGTTTTCTTTTGGCTTTACTAGGGTGAAAAGACCTTGAGGGTTAAATTGATCAGCCATCTAGCTTCATGTGGTCAACGCCTTGATTCTAATCAGCTGAACTAGCCGTTTTGGCAAGTGTCCTAAACACAGCACTACACTGGACTCTCTGCCCCTGTGTGATGCCTCCGTACACTGTGCCACACttcttttaaacacacactgatctatacatgtgtgtgtatgtatatgtgtatatatatatatatgtgtgtgt

Function

GO:

id name namespace
GO:0001740 Barr body cellular_component
GO:0005515 protein binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU82716 lncRNA downstream 27972 35134978 ~ 35135563 (-) True G66154
TU82674 lncRNA downstream 67882 35081965 ~ 35095653 (-) False G66126
TU82677 lncRNA downstream 67882 35081965 ~ 35095653 (-) False G66126
TU82675 lncRNA downstream 81668 35079678 ~ 35081867 (-) True G66126
TU82676 lncRNA downstream 81668 35079678 ~ 35081867 (-) False G66126
TU82744 lncRNA upstream 84533 35252402 ~ 35252669 (-) True G66181
TU82781 lncRNA upstream 176837 35344706 ~ 35349499 (-) True AMCG00020867
TU82807 lncRNA upstream 261315 35429184 ~ 35429394 (-) True G66228
TU82811 lncRNA upstream 265409 35433278 ~ 35433565 (-) True G66232
TU82845 lncRNA upstream 268421 35436290 ~ 35502312 (-) True G66259
AMCG00020852 mRNA downstream 35780 35124415 ~ 35127755 (-) True AMCG00020852
AMCG00020851 mRNA downstream 52110 35101007 ~ 35111425 (-) True AMCG00020851
AMCG00020854 mRNA downstream 63578 35085817 ~ 35099957 (-) True AMCG00020854
AMCG00020849 mRNA downstream 139723 35009891 ~ 35023812 (-) True AMCG00020849
AMCG00020845 mRNA downstream 271830 34890247 ~ 34891705 (-) True AMCG00020845
AMCG00020860 mRNA upstream 21651 35189520 ~ 35197646 (-) True AMCG00020860
AMCG00020861 mRNA upstream 67882 35235751 ~ 35238599 (-) True AMCG00020861
AMCG00020862 mRNA upstream 85925 35253794 ~ 35256200 (-) True AMCG00020862
AMCG00020866 mRNA upstream 132516 35300385 ~ 35310071 (-) True AMCG00020866
AMCG00020867 mRNA upstream 179405 35347274 ~ 35349226 (-) False AMCG00020867
TU82585 other downstream 298230 34862619 ~ 34865305 (-) True G66054
TU82568 other downstream 349366 34808774 ~ 34814169 (-) False AMCG00020836
TU82397 other downstream 923838 34222315 ~ 34239697 (-) False AMCG00020810
TU82216 other downstream 1794430 33368625 ~ 33369105 (-) True G65756
TU82127 other downstream 2272042 32886364 ~ 32891493 (-) True G65679
TU82875 other upstream 511563 35679432 ~ 35684555 (-) True G66279
TU82986 other upstream 646100 35813969 ~ 35819830 (-) True AMCG00020887
TU83060 other upstream 807895 35975764 ~ 35986696 (-) False AMCG00020900
TU83279 other upstream 1872578 37040447 ~ 37045939 (-) False AMCG00020923
TU83289 other upstream 1897294 37065163 ~ 37067792 (-) False AMCG00020922

Expression Profile