RNA id: TU82719


Basic Information

Item Value
RNA id TU82719
length 1886
RNA type TUCP
GC content 0.45
exon number 5
gene id AMCG00020853
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 35149568 ~ 35170179 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TCGCGCACAGGCTCGCGGAGGGGTTtattgtttctctctgtctcgaGCGGAAAATTGTCTCCGACCTCTCGATTCCTGACaggaatttcaataaaatataataaataaacagcgaAAATGGCAGGAGGGAAAGCTGGAAAAGACAGCGGCAAGGCAAAGGCTAAAGCGGTGTCTCGCTCACAGAGGGCTGGTTTGCAGTTCCCAGTGGGTCGTATCCATAGACACTTGAAGACCCGCACCACAAGCCACGGGCGTGTGGGGGCTACAGCAGCCGTGTACAGCGCCGCCATCCTTGAATACCTTACTGCTGAGgtgTTGGAGTTGGCAGGAAATGCCTCCAAAGACCTGAAGGTGAAGCGCATCACCCCTCGCCACTTGCAGCTCGCCATCCGTGGAGACGAGGAGCTCGACTCACTCATCAAGGCCACCATTGCTGGGGGAGGTGTCATTCCTCACATTCACAAATCCCTCATTGGGAAGAAGGGGCAACAGAAGACTGCATAGAGGAGCGGGTGAAGGGGGCGGCCCTCTCGCTGCGCTGTTACAGGGACGGGCGCAGAGCGGGGACGGGCTGCAAGATTATTccttttcccatttattttttttttattttttttaaaccgtaGTTCAAGTTCAAGGAACGAttgttaggttttttttgtttgtttgttttggtttttttttgagttgtaataatacaaaacaagaagaagaaaaaaaaactgcaaaaggaaaaaaaatactatataaaacatttgtacgttcttttagatttttgtttgatggacaggggaaaaaaatgtattgtcatgTTGTGGACGCAAATTTGTTGATTGGCTAGGGGTTCAACAgtgttttatacaaaaaaaatggaattgttAAACCATTTTTTACAAAAGAGACAGTCTCCTGGTTTTCTTTTGGCTTTACTAGGGTGAAAAGACCTTGAGGGTTAAATTGATCAGCCATCTAGCTTCATGTGGTCAACGCCTTGATTCTAATCAGCTGAACTAGCCGTTTTGGCAAGTGTCCTAAACACAGCACTACACTGGACTCTCTGCCCCTGTGTGATGCCTCCGTACACTGTGCCACACttcttttaaacacacactgatctatacatgtgtgtgtatgtatatgtgtatatatatatatatgtgtgtgtatgtgtatagatCAATTTCCCCTAGCGGTTTTGTatccattcattttattcactgtgCAGACGAGTACTTCCGCTAATCTATATTTATGCCCTAGAGAGAGACTGAAGTGAATTGGAAATGATTTGGACAGAAAGAGGAGACTGCCCAAACGGGCAGTGAGTTGGAAAGGCACACTCTGAAATGCCACATCCTTATCTTATACAAAATGTTCTGATTCTCTTTCCATGGGAGCACTGGCACACAGTAGTTTACATGTATACCGAGGTCTAGGATTAAATCTTCCTGGTGTCACTCGCGACTCGTGCTTCAGTGGAGGTGGCCTGACTTTGAGAACGCCTCTCTGGGTCTCTGGTCTTGCTGAGCGGCAAATGTTCTCCCATCTGCGGTGCGCGTCGCAAAGGGAGAGATCTGAGCTGTGTGGAGCAGCTGTGATCACGTCCGATAGCGTTCCTCTTCAGGGTCCGGTGTGTGACTGCGGTCATAAGGTTTTACAGTGTACTGTGGTATGACCTTAAAACCTTGTTTGCGGTGTATCACTCGAGCTGCTGAGGTTTCAAAGCTAAAGTGTGATACTGGTGCAGGGAGAGAGGTTGGTGAAGAAGACTGAAGTATGAATGTGGCTTCATAATAAACCTACTTCCAGTCTGTAGAactatggaaaataaaatctgttcctgcataagcacacaaaaaagcactgaataaaaaaatacacaaagg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU82716 lncRNA downstream 27251 35134978 ~ 35135563 (-) True G66154
TU82674 lncRNA downstream 67161 35081965 ~ 35095653 (-) False G66126
TU82677 lncRNA downstream 67161 35081965 ~ 35095653 (-) False G66126
TU82675 lncRNA downstream 80947 35079678 ~ 35081867 (-) True G66126
TU82744 lncRNA upstream 82223 35252402 ~ 35252669 (-) True G66181
TU82781 lncRNA upstream 174527 35344706 ~ 35349499 (-) True AMCG00020867
TU82807 lncRNA upstream 259005 35429184 ~ 35429394 (-) True G66228
TU82811 lncRNA upstream 263099 35433278 ~ 35433565 (-) True G66232
TU82845 lncRNA upstream 266111 35436290 ~ 35502312 (-) True G66259
AMCG00020852 mRNA downstream 35059 35124415 ~ 35127755 (-) True AMCG00020852
AMCG00020851 mRNA downstream 51389 35101007 ~ 35111425 (-) True AMCG00020851
AMCG00020854 mRNA downstream 62857 35085817 ~ 35099957 (-) True AMCG00020854
AMCG00020849 mRNA downstream 139002 35009891 ~ 35023812 (-) True AMCG00020849
AMCG00020845 mRNA downstream 271109 34890247 ~ 34891705 (-) True AMCG00020845
AMCG00020860 mRNA upstream 19341 35189520 ~ 35197646 (-) True AMCG00020860
AMCG00020861 mRNA upstream 65572 35235751 ~ 35238599 (-) True AMCG00020861
AMCG00020862 mRNA upstream 83615 35253794 ~ 35256200 (-) True AMCG00020862
AMCG00020866 mRNA upstream 130206 35300385 ~ 35310071 (-) True AMCG00020866
AMCG00020867 mRNA upstream 177095 35347274 ~ 35349226 (-) False AMCG00020867
TU82585 other downstream 297509 34862619 ~ 34865305 (-) True G66054
TU82568 other downstream 348645 34808774 ~ 34814169 (-) False AMCG00020836
TU82397 other downstream 923117 34222315 ~ 34239697 (-) False AMCG00020810
TU82216 other downstream 1793709 33368625 ~ 33369105 (-) True G65756
TU82127 other downstream 2271321 32886364 ~ 32891493 (-) True G65679
TU82875 other upstream 509253 35679432 ~ 35684555 (-) True G66279
TU82986 other upstream 643790 35813969 ~ 35819830 (-) True AMCG00020887
TU83060 other upstream 805585 35975764 ~ 35986696 (-) False AMCG00020900
TU83279 other upstream 1870268 37040447 ~ 37045939 (-) False AMCG00020923
TU83289 other upstream 1894984 37065163 ~ 37067792 (-) False AMCG00020922

Expression Profile