RNA id: AMCG00020854


Basic Information

Item Value
RNA id AMCG00020854
length 1161
RNA type mRNA
GC content 0.58
exon number 18
gene id AMCG00020854
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 35085817 ~ 35099957 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGCAGCTTCCGTGTTCTATGACTATCTCCCTCTTCATTAATTCTCAGGTTTCTGTTTTCATCCAGGACAAGAGCCTCATTGTGCGCCAGTCCCCCCCCACCAGTCACAGCACGCAGTGGGCTGCTCTATTCTGTGCTGcCCAGCAAACCGAGTCACACAGCGCCACTTCTGTAAACGAGGAGCCGGGATTCATATCTTATCTGCGCTCAGCCAAACCGAAAGTGCAGCAGAGTTTCTTCAGCAAGTTAAAAAACACGCATATTCCTCCCCCAGCCCCGCCCAGAAGGATAGATAACGGCGCAGCCTACGGGTGGTCCGTCGATGGCTGCGATGAGGACGGAGACACCTACGAGGCCCCCCCCTGTGAGCGCCCCGCCATGAAGGTGTTCCCCGGACAGGTGGAGGAGAATAAGCCTGAGCCGCAGGAGGATGCAGATGACACATACATTGACCCCAGCCCCAACAACCCCCCTCAGGTGAACCGTAAGGACAAGCCAGGAAAGAAGACTCCCCCAAAACAGATCCTTCCCCCTCGGCCTGCGCAGGGCTCAGCCTCGCTGCCAGAGGAAGATGTGTACCTGGACCCCAACGAAGGCCAGGATGACGAACTGTACCTGGAGCCGAACCCCGGACGAAGCCCCCTATTCCCAGAGCCAAGTCAGGAAGCCAGAAGGACGTCTTTCCCAATCAAGGTGCCCTCCCTGACGTCAACAGCCAAGCCCCCCCTGCCCTCCCAACTCAAAGAGCCCAAGCCCAGCCCTCCAATCCCCAGAGCCCTGGCGGACAGTCCCGGAGCCAATCACACACCGCCCAGGTCGTCCTTCCTGTCAGGGCCAGAGGAGGCCAACCTGCAGGGCAAGGAGTGGTTTGCAGGAAGCTGTGATCGCAAAACTGCAGAAGCAGTGCTCCACAAAGTCAAAAAGGACGGGGCGTTCCTGGTCAGGCTGAGCTCGGCCCAGACGGGTCGGCAGCCCTACACCCTGGTGGTGCTGTACCAGGGGAAGGTCTACAACATTCCTGTGCGCTACCTGGAGGACAGCCGCCGCTACGCACTGGGCAAGGAGGGCAAGAGGAGTGAGGAGttCTTTGAGACTCTCTCGGACATCATCTCCCACCACACGAAGAACCCCCTCCTACTGATTGACATTATTCTGATATAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU82675 lncRNA downstream 3950 35079678 ~ 35081867 (-) True G66126
TU82676 lncRNA downstream 3950 35079678 ~ 35081867 (-) False G66126
TU82668 lncRNA downstream 8255 35003578 ~ 35077562 (-) True G66123
TU82629 lncRNA downstream 142851 34898784 ~ 34942966 (-) True G66087
TU82573 lncRNA downstream 244575 34838761 ~ 34841242 (-) False AMCG00020837
TU82716 lncRNA upstream 35021 35134978 ~ 35135563 (-) True G66154
TU82744 lncRNA upstream 152445 35252402 ~ 35252669 (-) True G66181
TU82781 lncRNA upstream 244749 35344706 ~ 35349499 (-) True AMCG00020867
TU82807 lncRNA upstream 329227 35429184 ~ 35429394 (-) True G66228
TU82811 lncRNA upstream 333321 35433278 ~ 35433565 (-) True G66232
AMCG00020849 mRNA downstream 62005 35009891 ~ 35023812 (-) True AMCG00020849
AMCG00020845 mRNA downstream 194112 34890247 ~ 34891705 (-) True AMCG00020845
AMCG00020837 mRNA downstream 244494 34838761 ~ 34841323 (-) True AMCG00020837
AMCG00020838 mRNA downstream 259188 34818213 ~ 34826629 (-) True AMCG00020838
AMCG00020836 mRNA downstream 271523 34808604 ~ 34814294 (-) True AMCG00020836
AMCG00020851 mRNA upstream 1050 35101007 ~ 35111425 (-) True AMCG00020851
AMCG00020852 mRNA upstream 24458 35124415 ~ 35127755 (-) True AMCG00020852
AMCG00020853 mRNA upstream 63578 35163535 ~ 35167869 (-) False AMCG00020853
AMCG00020860 mRNA upstream 89563 35189520 ~ 35197646 (-) True AMCG00020860
AMCG00020861 mRNA upstream 135794 35235751 ~ 35238599 (-) True AMCG00020861
TU82585 other downstream 220512 34862619 ~ 34865305 (-) True G66054
TU82568 other downstream 271648 34808774 ~ 34814169 (-) False AMCG00020836
TU82397 other downstream 846120 34222315 ~ 34239697 (-) False AMCG00020810
TU82216 other downstream 1716712 33368625 ~ 33369105 (-) True G65756
TU82127 other downstream 2194324 32886364 ~ 32891493 (-) True G65679
TU82718 other upstream 49611 35149568 ~ 35170179 (-) False AMCG00020853
TU82719 other upstream 62857 35162814 ~ 35170179 (-) True AMCG00020853
TU82875 other upstream 579475 35679432 ~ 35684555 (-) True G66279
TU82986 other upstream 714012 35813969 ~ 35819830 (-) True AMCG00020887
TU83060 other upstream 875807 35975764 ~ 35986696 (-) False AMCG00020900

Expression Profile