RNA id: TU82704



Basic Information


Item Value
RNA id TU82704
length 1205
lncRNA type sense_over
GC content 0.55
exon number 1
gene id AMCG00020855
representative True

Chromosome Information


Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 35147603 ~ 35149418 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


AGACGCCCTGATCCGGGACCCCTTCCCCGAGATCCACCGAGTGGAGAGGTTCCTGCGGCTGCCCCCCAGGATCACCCCCTCCAACTTCTACTTCAACAGCACCAAGGGCTTCTACTGCCTGCTCTCCGATGGCCATGACAAGTGCCTGGACGAGTCCAAGGGCCGCCCCCACCCCGAGCTGAGCCCCATCGTCCTGCGCACcctctgcaaatatttcaaggaGCCCAACCAGCACTTCTTCCACATGGTCGGCCGGACTTTCACCTGGTGCTGAAGCCTGGGGGATAAGGCCCTGGGCCGGGCTGGACTGGGCATGGCTGGGTTGGGTTGTGTCACCAGAAAGGCaggcgtgcacacacacacaggcaggctCGGAGTGaaatacacaataacaaaacCCCATAGCTGAGTGGAGGCTGCAATGGGCGTATCAACACTCAGCACTGGTGGGTTCGGTGTCCCGCTTAAGCCGGGCCTGTAGAAAGCTGTAGCGAGCCGCTCAGCCCAGATTGCGAGACAGACAGAACCTGGAGGGGCTGCAAACCTCAACTCCAGTTTAATTTCACTCAATTCCTCCCCCTGAGACAGTCCAGCCAGCTCCCCCCTCCGTAAACCAGGGGGATTACCATCGAACTCGGATGTTCCCATTTCTGTGCAGGAGGCCATTCGCCTGCCTACCTGCCATGAGATGAGAGACAAGCTGCCTCCCAAGCCCGCTGTGAAGAGTCAGGGAGTCTGAGGGAAGATAGAAGAGCCAACCGTCCAGACGCAAAGatgaattgttttttaatgggaAATTGGAAGAAATCATACCAAGTCCTCCCACCTCCCGTCCTCCCCCCCGGGTACAGGAAACGCGACCTGAGGGCTGGACTGGATAGCCACCAAGCTGCCAGTAAGGGAGGCATCTGAGCAATGGGACACTACAGAAAAGCTCTTCCCTGTACGCTGTCTGCCATCTTGTGTTAGCGGTTCTTGAGCAGTGCAGTGCATCCCACAGAACATGGGAATCATTCACGCAttcattcatgtgtgtgtgtgtgtgtctatgttgtgcgtgcgtgtgtgcttGTGAGTGTAGTGATTACTAGTACTGTGTAAGCGACTGCTCTTGTCCAGTCTGTGAGAGACACAGTGTTGAAGCACTAAGAGCAGATCAGAGGAGCTCGAATTGCACAGAACCTGAAGAACTGTTTTCAATGCAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU82612 lncRNA upstream 121985 35025003 ~ 35026229 (+) True G66072
TU82516 lncRNA upstream 398063 34749498 ~ 34750151 (+) True G65995
TU82517 lncRNA upstream 398871 34749127 ~ 34749343 (+) True G65996
TU82515 lncRNA upstream 400100 34746893 ~ 34748114 (+) True G65994
TU82489 lncRNA upstream 415835 34676911 ~ 34732379 (+) True G65978
TU82709 lncRNA downstream 17650 35167068 ~ 35170275 (+) True G66151
TU82810 lncRNA downstream 283850 35433268 ~ 35433558 (+) True G66231
TU82838 lncRNA downstream 403485 35552903 ~ 35553230 (+) True G66258
TU82891 lncRNA downstream 566627 35716045 ~ 35716249 (+) True G66290
TU82924 lncRNA downstream 608690 35758108 ~ 35761032 (+) True G66319
AMCG00020858 mRNA upstream 672 35146077 ~ 35147542 (+) True AMCG00020858
AMCG00020850 mRNA upstream 28053 35113159 ~ 35120161 (+) True AMCG00020850
AMCG00020848 mRNA upstream 65831 35077401 ~ 35082383 (+) True AMCG00020848
AMCG00020847 mRNA upstream 71794 35056144 ~ 35076420 (+) True AMCG00020847
AMCG00020846 mRNA upstream 142716 34977924 ~ 35005498 (+) True AMCG00020846
AMCG00020856 mRNA downstream 9256 35158674 ~ 35161096 (+) True AMCG00020856
AMCG00020857 mRNA downstream 21634 35171052 ~ 35172101 (+) True AMCG00020857
AMCG00020859 mRNA downstream 23608 35173026 ~ 35175613 (+) True AMCG00020859
AMCG00020864 mRNA downstream 128442 35277860 ~ 35287818 (+) True AMCG00020864
AMCG00020863 mRNA downstream 205288 35354706 ~ 35356516 (+) True AMCG00020863
TU82596 other upstream 139892 34967844 ~ 35008322 (+) True G66060
TU82530 other upstream 360740 34784212 ~ 34787474 (+) True G66008
TU82376 other upstream 736594 34404534 ~ 34411620 (+) True AMCG00020820
TU82307 other upstream 1088749 34059111 ~ 34059465 (+) True G65830
TU82274 other upstream 1188532 33954806 ~ 33959682 (+) False AMCG00020796
TU82706 other downstream 14395 35163813 ~ 35164985 (+) True G66149
TU82915 other downstream 597807 35747225 ~ 35750354 (+) True AMCG00020874
TU82978 other downstream 717975 35867393 ~ 35908402 (+) True G66362
TU83151 other downstream 1105281 36254699 ~ 36256511 (+) True G66506
TU83200 other downstream 1765397 36914815 ~ 36917436 (+) True G66551

Expression Profile