RNA id: AMCG00020858



Basic Information


Item Value
RNA id AMCG00020858
length 528
RNA type mRNA
GC content 0.67
exon number 2
gene id AMCG00020858
representative True

Chromosome Information


Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 35146077 ~ 35147542 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


ATGATCGCATTTCAAGCCTATCAAGAAATCCAGGTGGTTATGAAACACAACGCAATCAATACCGTCCGTGTTGCGTCAAACCAGTCGCGGCTCTGTGCGGCCTGTGATGCCAATAGTCACCGCTGGGCGGCGACAGAGGCCCCCCGACACGGGCGTCCCTCGTTCCGCTTCTCAGAGCGAAGCACAGCGACTGTCTGGACGCGTCCCGCCGTCCAACCGTCCCACCGTCCCGCAGACCCGCCGTCCCACCGTCCCGCAGACCCGCCGTCCCGCCGTCCCACCGTCCCGCAGACCCACCGTCCCACCGTCCCGCAGACCCGCCGTCCCGCCGTCCCGCCGTCCCGCAGACCCGCAGACCCGCAGATATCTGCCCCGTGTGACCCTGACGGGAGGTCACAGACGGACACTCCGGGCCACGGGGGCGGCATCCTGTCAGTGAGGGTCCTGCCAAACTCTTTGTGCCACAGGCCTCGACCCCTGACCCCACCAGCCTGCCTGCAGACACAGACTCCTGGCCCCCTCCACTAG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU82612 lncRNA upstream 119848 35025003 ~ 35026229 (+) True G66072
TU82516 lncRNA upstream 395926 34749498 ~ 34750151 (+) True G65995
TU82517 lncRNA upstream 396734 34749127 ~ 34749343 (+) True G65996
TU82515 lncRNA upstream 397963 34746893 ~ 34748114 (+) True G65994
TU82489 lncRNA upstream 413698 34676911 ~ 34732379 (+) True G65978
TU82704 lncRNA downstream 672 35148214 ~ 35149418 (+) True AMCG00020855
TU82709 lncRNA downstream 19526 35167068 ~ 35170275 (+) True G66151
TU82810 lncRNA downstream 285726 35433268 ~ 35433558 (+) True G66231
TU82838 lncRNA downstream 405361 35552903 ~ 35553230 (+) True G66258
TU82891 lncRNA downstream 568503 35716045 ~ 35716249 (+) True G66290
AMCG00020850 mRNA upstream 25916 35113159 ~ 35120161 (+) True AMCG00020850
AMCG00020848 mRNA upstream 63694 35077401 ~ 35082383 (+) True AMCG00020848
AMCG00020847 mRNA upstream 69657 35056144 ~ 35076420 (+) True AMCG00020847
AMCG00020846 mRNA upstream 140579 34977924 ~ 35005498 (+) True AMCG00020846
AMCG00020841 mRNA upstream 179592 34964622 ~ 34966485 (+) True AMCG00020841
AMCG00020855 mRNA downstream 61 35147603 ~ 35148487 (+) False AMCG00020855
AMCG00020856 mRNA downstream 11132 35158674 ~ 35161096 (+) True AMCG00020856
AMCG00020857 mRNA downstream 23510 35171052 ~ 35172101 (+) True AMCG00020857
AMCG00020859 mRNA downstream 25484 35173026 ~ 35175613 (+) True AMCG00020859
AMCG00020864 mRNA downstream 130318 35277860 ~ 35287818 (+) True AMCG00020864
TU82596 other upstream 137755 34967844 ~ 35008322 (+) True G66060
TU82530 other upstream 358603 34784212 ~ 34787474 (+) True G66008
TU82376 other upstream 734457 34404534 ~ 34411620 (+) True AMCG00020820
TU82307 other upstream 1086612 34059111 ~ 34059465 (+) True G65830
TU82274 other upstream 1186395 33954806 ~ 33959682 (+) False AMCG00020796
TU82706 other downstream 16271 35163813 ~ 35164985 (+) True G66149
TU82915 other downstream 599683 35747225 ~ 35750354 (+) True AMCG00020874
TU82978 other downstream 719851 35867393 ~ 35908402 (+) True G66362
TU83151 other downstream 1107157 36254699 ~ 36256511 (+) True G66506
TU83200 other downstream 1767273 36914815 ~ 36917436 (+) True G66551

Expression Profile