RNA id: AMCG00020859



Basic Information


Item Value
RNA id AMCG00020859
length 324
RNA type mRNA
GC content 0.58
exon number 2
gene id AMCG00020859
representative True

Chromosome Information


Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 35173026 ~ 35175613 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


ATGAAGACCACGGCGTCGTCGTGCCCGGGGTTGGGGGGATCGGATGCGGTTGAGAATGGGCAGCTGTTTGATATACAGGAGGAGGACATTCCTCGCCAGTTTCACTGTCCGAGGACGGCGACCACGCTCAGCACTGCAGTGGACTGTGGGACACAAGGCCGGGGACTGAGGATGGAAGCTCACGGCGGTCGGATGGGCAGTGAGGATTGTGCAGGGGCAGTCCACTATGAAGAAGCCCTGCCACTCGAATCTGCTCTGAAAACaccttttctgtgtgtttgcttcTGCTGTTGCCTGGTTTCTGCTGGGTGCAGCCTGGTGTAG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU82709 lncRNA upstream 2751 35167068 ~ 35170275 (+) True G66151
TU82704 lncRNA upstream 23608 35148214 ~ 35149418 (+) True AMCG00020855
TU82612 lncRNA upstream 146797 35025003 ~ 35026229 (+) True G66072
TU82516 lncRNA upstream 422875 34749498 ~ 34750151 (+) True G65995
TU82517 lncRNA upstream 423683 34749127 ~ 34749343 (+) True G65996
TU82810 lncRNA downstream 257655 35433268 ~ 35433558 (+) True G66231
TU82838 lncRNA downstream 377290 35552903 ~ 35553230 (+) True G66258
TU82891 lncRNA downstream 540432 35716045 ~ 35716249 (+) True G66290
TU82924 lncRNA downstream 582495 35758108 ~ 35761032 (+) True G66319
TU82931 lncRNA downstream 592628 35768241 ~ 35768571 (+) True G66325
AMCG00020857 mRNA upstream 925 35171052 ~ 35172101 (+) True AMCG00020857
AMCG00020856 mRNA upstream 11930 35158674 ~ 35161096 (+) True AMCG00020856
AMCG00020855 mRNA upstream 24539 35147603 ~ 35148487 (+) False AMCG00020855
AMCG00020858 mRNA upstream 25484 35146077 ~ 35147542 (+) True AMCG00020858
AMCG00020850 mRNA upstream 52865 35113159 ~ 35120161 (+) True AMCG00020850
AMCG00020864 mRNA downstream 102247 35277860 ~ 35287818 (+) True AMCG00020864
AMCG00020863 mRNA downstream 179093 35354706 ~ 35356516 (+) True AMCG00020863
AMCG00020868 mRNA downstream 200657 35376270 ~ 35401524 (+) True AMCG00020868
AMCG00020869 mRNA downstream 229530 35405143 ~ 35412795 (+) True AMCG00020869
AMCG00020872 mRNA downstream 240439 35416052 ~ 35416845 (+) True AMCG00020872
TU82706 other upstream 8041 35163813 ~ 35164985 (+) True G66149
TU82596 other upstream 164704 34967844 ~ 35008322 (+) True G66060
TU82530 other upstream 385552 34784212 ~ 34787474 (+) True G66008
TU82376 other upstream 761406 34404534 ~ 34411620 (+) True AMCG00020820
TU82307 other upstream 1113561 34059111 ~ 34059465 (+) True G65830
TU82915 other downstream 571612 35747225 ~ 35750354 (+) True AMCG00020874
TU82978 other downstream 691780 35867393 ~ 35908402 (+) True G66362
TU83151 other downstream 1079086 36254699 ~ 36256511 (+) True G66506
TU83200 other downstream 1739202 36914815 ~ 36917436 (+) True G66551
TU83857 other downstream 5145500 40321113 ~ 40321821 (+) True G67108

Expression Profile