RNA id: AMCG00020860


Basic Information

Item Value
RNA id AMCG00020860
length 1642
RNA type mRNA
GC content 0.42
exon number 4
gene id AMCG00020860
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 35189520 ~ 35197646 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTGGCTCCAGCAGAGTGAGTCACATGACCCTCTGGACCTGCAATAAAACACCAGCACTCTCCTGCTTTACACTCAGTGTGCCTCCGCAGTAAACATGGCAAGCGGTTTGAGAACAGCAACATCTCCTAAGCCGAAAGCAAAAGTAATGCTGCAGACGTCCAACAACAAAATAGTCAAAATTGAGACGTTCCCAGCACTGCAGATCTGTGCGAAAGACCTGCAGATACAAGCAGTACACCCAAATGAAGTGGCTGTGACACAGCACTTCTACAATGAAGACCAAGACCAGACCAATATCGCTTTTGCCTTTTGGAAGAACAACAAATACTACTACCCGTTTGTGGAGGGAGAGCAGCTAAAGctGGATGAAAAGGAAGGTCTGCAAACCCCCATAGACTCGAAATATAAATTCAAGTGGAACTGTGAGAAGATCGAGTCCGTTGCCAAGCCTGACTGGTTCCTCACTATGGAAGAGGGAGGGACGGTCAAAATAGACACAAGATCAGACTCCGTCTTCAAGCAGTCAGTGATCTCAGAATCTTAAACATAAACATCATCAACGAATTATTAAAAGTACTGGGAcatccagaaaaaaaatgtaaaaaaaaaacgaatacacCCCTAAATACATAAGTACAGCAGAACATCATGAATTGAATTGGGCGTAGGCCTGAGTGACAGCTGGGCTTGCTAGGGGGCTGGAGTGGGAGGCTGTCACAGCGTACTGTCGGGTGGCGAGCCAAGAGTGTGTCCCGCACATTGAGCTGAGCCAAGATATGAGCCGAAACAGAAAACTTCATTAAAGTTCATTAAAGGAGAAATTTAGGGTCATTATAGGAGAAATTTGTTCACAGCATTTGCAGTCTGGCACCTCAATCTGGAAACGCTAGCAAAAACAGGTACACCAAAAAACCCAACACATTCATAGTCACAGAGGTCAGTCTGAAGACAATCTCCAATCTGTTTTGCAAGATGCAAGTTTTTCCTCATTACGTGTTGTGGAGTAGGCAAGCCTAACTTCCCTCCGGCATAGTTTCACCACAGCTGGCCTACGCTACAGTGTTATCCCGAATACCATAATGTCTTCACTGGGGGTTATTGCTGCCTTTGGTAAGATTCTGGTAAGATTCAACAGCCATGGTCTCTGCTCTGGCTTGTCCCACTGCTCTTAGTTCCAGTTTAgttgtgggggggaggggggccgATGAAAATACCAGTGTAGGACATTTTTGTATCTGCCTGTGTAGGAGTAACTTGCTCTTCGAGGAGGATGGTCATTAGGGTAGTATGACCACAAACACAACCAACGCAATGTTACATTGAATAGTCTACATGTTGTTGTCTAGCGTTTAGTTTTTAGCTGCATCTACAAATCACCCTAACAAACACAGTATATCTTTTAATAGGTCTGAAATATTATTTCCCCCTCCACTGACATGTATTCATTCCAActttttattactgttattatcaaGAATCTGACTTAACTAatcttgtattgttttactACACTAATGTATTCAAGTTATTcttgtaactttttttaaaatactaataacTATTATAATCTTTGATATTGTTCCTTTGATATGTATTGTAGCCATTCAGCAatgaaaactgtattaataaaacatgattttaa

Function

GO: NA

KEGG:

id description
ko04015 Rap1 signaling pathway

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU82716 lncRNA downstream 53957 35134978 ~ 35135563 (-) True G66154
TU82674 lncRNA downstream 93867 35081965 ~ 35095653 (-) False G66126
TU82677 lncRNA downstream 93867 35081965 ~ 35095653 (-) False G66126
TU82675 lncRNA downstream 107653 35079678 ~ 35081867 (-) True G66126
TU82744 lncRNA upstream 54756 35252402 ~ 35252669 (-) True G66181
TU82781 lncRNA upstream 147060 35344706 ~ 35349499 (-) True AMCG00020867
TU82807 lncRNA upstream 231538 35429184 ~ 35429394 (-) True G66228
TU82811 lncRNA upstream 235632 35433278 ~ 35433565 (-) True G66232
TU82845 lncRNA upstream 238644 35436290 ~ 35502312 (-) True G66259
AMCG00020853 mRNA downstream 21651 35163535 ~ 35167869 (-) False AMCG00020853
AMCG00020852 mRNA downstream 61765 35124415 ~ 35127755 (-) True AMCG00020852
AMCG00020851 mRNA downstream 78095 35101007 ~ 35111425 (-) True AMCG00020851
AMCG00020854 mRNA downstream 89563 35085817 ~ 35099957 (-) True AMCG00020854
AMCG00020849 mRNA downstream 165708 35009891 ~ 35023812 (-) True AMCG00020849
AMCG00020861 mRNA upstream 38105 35235751 ~ 35238599 (-) True AMCG00020861
AMCG00020862 mRNA upstream 56148 35253794 ~ 35256200 (-) True AMCG00020862
AMCG00020866 mRNA upstream 102739 35300385 ~ 35310071 (-) True AMCG00020866
AMCG00020867 mRNA upstream 149628 35347274 ~ 35349226 (-) False AMCG00020867
AMCG00020865 mRNA upstream 163813 35361459 ~ 35372256 (-) True AMCG00020865
TU82718 other downstream 19341 35149568 ~ 35170179 (-) False AMCG00020853
TU82719 other downstream 19341 35162814 ~ 35170179 (-) True AMCG00020853
TU82585 other downstream 324215 34862619 ~ 34865305 (-) True G66054
TU82568 other downstream 375351 34808774 ~ 34814169 (-) False AMCG00020836
TU82397 other downstream 949823 34222315 ~ 34239697 (-) False AMCG00020810
TU82875 other upstream 481786 35679432 ~ 35684555 (-) True G66279
TU82986 other upstream 616323 35813969 ~ 35819830 (-) True AMCG00020887
TU83060 other upstream 778118 35975764 ~ 35986696 (-) False AMCG00020900
TU83279 other upstream 1842801 37040447 ~ 37045939 (-) False AMCG00020923
TU83289 other upstream 1867517 37065163 ~ 37067792 (-) False AMCG00020922

Expression Profile