RNA id: AMCG00020861


Basic Information

Item Value
RNA id AMCG00020861
length 1215
RNA type mRNA
GC content 0.63
exon number 3
gene id AMCG00020861
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 35235751 ~ 35238599 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGCTCAGCCCAAAATGACTCCAGCAAGGTCTGCAGTACTGGGGAACCCAGCCAGGACGGCAGGGAACAAGGTTCAGGCAAACAGCGCCCAGGCTAAACCACTTGTGTGTCCAGGCCCTGCTAAGGCTGCTCCCAAGAGACCACTCCAGACACGGCCTACCCTCATGGGTCCTGGGGTTCAGTCCTCCAGAGTAGGGACCCAGACCCAAGCCCCTGCAGATCCTCTGGGCCTCCCTGCTGCCCCCCGGGCAAGGAGCATGAGGGGGACTGGGTTGAATGAGGTCCAAAGGCAGCATTGTGCTCTGAAGAGAGCTCTGGGACTGGCTTCGGCTGTGCTGGGGGTAGAGGCCCAGCATGTTGGAGCTGCGACTCGGGTCAGCCACAGTGTGGGGGGAGCAGGGAATCACAGCTGCCCTGCTGGAGAAAGAGCAAGCACTGGAGCGGGGCAGGGCAAACGTGGTAATACTGCTGGGTTAAAAGAGCAGCAGAGGGGTCAGGGGAGCAGCACCAGTGCCTCCAAGAGACCGAGCCGCAACTCCTGTTTCCAAGCTGAGCCAGGGCAGCCAGGGGTGGCAGCAGGGAGGCCGACACGAGAGCGCAAGAGCACGGGGCCGCCCTGGCAGTGCAGAGCAGCCAGCTTGGCCGGTACGGCAGCAGAGGCCAGGCCCAAACCCCACCCTACCACTATGGCCCTGGCCCACACCAGACCCGGGAGTCAGGGCCCAGCTGTGAGGACCATGTCCACGGAGCCTGCAAGGATTAACGGTGGCAGGACTGGCACTCACAGTAGCAGCGGAGAGCAGGGTACAGTGCGTCCCGAGAAGACATTCAGTAATGCGCAGGAGGAAAGGATGCGGAAGCTGCAGGAGTGGCGCGAGTCGAGGGGCATCTCGTACAAGCGCCCGCCCATGCCCACCCCCAGGAAGTCGGCAAAGAAGAAGAAGCCGCCAGCCCCACGCCAGTCCTTCTGGAGTGCCATCGAGGAGGAGGACCAGGTCAACAGCCTGGTGACAAGTGTGGAGGCCACGCTGGCCGACTGCCTGAAGCTGCTGGAGGAGgGCTTTCCCTCCCAGGAGGTGTCCACTCTGCTGTCTCGGGTGCCCATGGCCCAGAGGTTTGCCCGGTACTGGATCTGCCGGGTGCGACTGATGGAGCGAGCCGGAGACTACGAGGTGCTCCCGCTGTTCGAGGAGGCTGTGCGGGTGGTGCTGGAG

Function

GO: NA

KEGG:

id description
K16769 CKAP2; cytoskeleton-associated protein 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU82716 lncRNA downstream 100188 35134978 ~ 35135563 (-) True G66154
TU82674 lncRNA downstream 140098 35081965 ~ 35095653 (-) False G66126
TU82677 lncRNA downstream 140098 35081965 ~ 35095653 (-) False G66126
TU82675 lncRNA downstream 153884 35079678 ~ 35081867 (-) True G66126
TU82744 lncRNA upstream 13803 35252402 ~ 35252669 (-) True G66181
TU82781 lncRNA upstream 106107 35344706 ~ 35349499 (-) True AMCG00020867
TU82807 lncRNA upstream 190585 35429184 ~ 35429394 (-) True G66228
TU82811 lncRNA upstream 194679 35433278 ~ 35433565 (-) True G66232
TU82845 lncRNA upstream 197691 35436290 ~ 35502312 (-) True G66259
AMCG00020860 mRNA downstream 38105 35189520 ~ 35197646 (-) True AMCG00020860
AMCG00020853 mRNA downstream 67882 35163535 ~ 35167869 (-) False AMCG00020853
AMCG00020852 mRNA downstream 107996 35124415 ~ 35127755 (-) True AMCG00020852
AMCG00020851 mRNA downstream 124326 35101007 ~ 35111425 (-) True AMCG00020851
AMCG00020854 mRNA downstream 135794 35085817 ~ 35099957 (-) True AMCG00020854
AMCG00020862 mRNA upstream 15195 35253794 ~ 35256200 (-) True AMCG00020862
AMCG00020866 mRNA upstream 61786 35300385 ~ 35310071 (-) True AMCG00020866
AMCG00020867 mRNA upstream 108675 35347274 ~ 35349226 (-) False AMCG00020867
AMCG00020865 mRNA upstream 122860 35361459 ~ 35372256 (-) True AMCG00020865
AMCG00020871 mRNA upstream 201430 35440029 ~ 35445018 (-) True AMCG00020871
TU82718 other downstream 65572 35149568 ~ 35170179 (-) False AMCG00020853
TU82719 other downstream 65572 35162814 ~ 35170179 (-) True AMCG00020853
TU82585 other downstream 370446 34862619 ~ 34865305 (-) True G66054
TU82568 other downstream 421582 34808774 ~ 34814169 (-) False AMCG00020836
TU82397 other downstream 996054 34222315 ~ 34239697 (-) False AMCG00020810
TU82875 other upstream 440833 35679432 ~ 35684555 (-) True G66279
TU82986 other upstream 575370 35813969 ~ 35819830 (-) True AMCG00020887
TU83060 other upstream 737165 35975764 ~ 35986696 (-) False AMCG00020900
TU83279 other upstream 1801848 37040447 ~ 37045939 (-) False AMCG00020923
TU83289 other upstream 1826564 37065163 ~ 37067792 (-) False AMCG00020922

Expression Profile