RNA id: AMCG00020862


Basic Information

Item Value
RNA id AMCG00020862
length 855
RNA type mRNA
GC content 0.60
exon number 6
gene id AMCG00020862
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 35253794 ~ 35256200 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGAACAGCCACTGCTTGGACATCAGCTCAGCCATGAGCAGTGACAGTGCCAGCATGAGTATGGTGGAGGTGGACAGCCCATGGGCAGCTGAGaGCTGCTACGCAAGGGATGGCCTGTGCTCACACAAAGCGTGGCACCGCTTGGGCGAggggctggagctggagctgtcGGTCCAGCACGGCATGCACAGCATGAGGCAGGTGGCCACGCTGGTCATCGCCCTGGAGAGGATGAAGAACGTGCATGAGAAGACGCTGAGCACCGAGTTCACAGATGACGACCTGTTCAACATCCTCATGGACCAGATGGTGGAAGTGCTGGAGGTGTTTCCGGAGAAGCTTGCGCAAGAGCCTGTGTTCCAGCAACAGCAGACGGGCCTGGTTTACAGCTTGCGTGACCAGAGACAGAAGTGCTGGATTCTGAACGAGCTGCCAGGGCGGGCAGCTGAGCTGCTGGCTGTCACCCTGCAGGGACCCAATGCCTCCCGGAGAGTGCAGCTGAACCTGTCCACCTACATACCCCAGCCTATTGCCCTCAGGCAGGGCCAGCCTGTCACCCTGAAGATCGACGGGCGCAACCTCTACCTGTCCTGCTCCAAAGGCAACGGCAACCCCATCCTCCAGGTCGAGGAAGTGACTGACAAGAGCAGTCTGAGCACCCTCCACTCCAGCAGCGACATGGCACGCTTCCTCTTCTACAAGAAGGATGGCGGCAACTCCAACACCACCTTCGAGTCGGCCATGTTCCCCAGCTGGTACATCAGCACTGCCGTGCGTGATGAGCGCCGCCCGGTGGCCATGTGTTCCGAGGAGCAGTCCGATCGCATCATCAACTTCATGGTCAGCGCAGAGTGA

Function

GO: NA

KEGG:

id description
K04519 IL1B; interleukin 1 beta

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU82744 lncRNA downstream 1125 35252402 ~ 35252669 (-) True G66181
TU82716 lncRNA downstream 118231 35134978 ~ 35135563 (-) True G66154
TU82674 lncRNA downstream 158141 35081965 ~ 35095653 (-) False G66126
TU82677 lncRNA downstream 158141 35081965 ~ 35095653 (-) False G66126
TU82675 lncRNA downstream 171927 35079678 ~ 35081867 (-) True G66126
TU82781 lncRNA upstream 88506 35344706 ~ 35349499 (-) True AMCG00020867
TU82807 lncRNA upstream 172984 35429184 ~ 35429394 (-) True G66228
TU82811 lncRNA upstream 177078 35433278 ~ 35433565 (-) True G66232
TU82845 lncRNA upstream 180090 35436290 ~ 35502312 (-) True G66259
TU82874 lncRNA upstream 394780 35650980 ~ 35692460 (-) False G66279
AMCG00020861 mRNA downstream 15195 35235751 ~ 35238599 (-) True AMCG00020861
AMCG00020860 mRNA downstream 56148 35189520 ~ 35197646 (-) True AMCG00020860
AMCG00020853 mRNA downstream 85925 35163535 ~ 35167869 (-) False AMCG00020853
AMCG00020852 mRNA downstream 126039 35124415 ~ 35127755 (-) True AMCG00020852
AMCG00020851 mRNA downstream 142369 35101007 ~ 35111425 (-) True AMCG00020851
AMCG00020866 mRNA upstream 44185 35300385 ~ 35310071 (-) True AMCG00020866
AMCG00020867 mRNA upstream 91074 35347274 ~ 35349226 (-) False AMCG00020867
AMCG00020865 mRNA upstream 105259 35361459 ~ 35372256 (-) True AMCG00020865
AMCG00020871 mRNA upstream 183829 35440029 ~ 35445018 (-) True AMCG00020871
AMCG00020870 mRNA upstream 190654 35446854 ~ 35485425 (-) True AMCG00020870
TU82718 other downstream 83615 35149568 ~ 35170179 (-) False AMCG00020853
TU82719 other downstream 83615 35162814 ~ 35170179 (-) True AMCG00020853
TU82585 other downstream 388489 34862619 ~ 34865305 (-) True G66054
TU82568 other downstream 439625 34808774 ~ 34814169 (-) False AMCG00020836
TU82397 other downstream 1014097 34222315 ~ 34239697 (-) False AMCG00020810
TU82875 other upstream 423232 35679432 ~ 35684555 (-) True G66279
TU82986 other upstream 557769 35813969 ~ 35819830 (-) True AMCG00020887
TU83060 other upstream 719564 35975764 ~ 35986696 (-) False AMCG00020900
TU83279 other upstream 1784247 37040447 ~ 37045939 (-) False AMCG00020923
TU83289 other upstream 1808963 37065163 ~ 37067792 (-) False AMCG00020922

Expression Profile